View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15743_high_3 (Length: 397)
Name: NF15743_high_3
Description: NF15743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15743_high_3 |
 | |
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| [»] chr4 (10 HSPs) |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 30264777 - 30264380
Alignment:
| Q |
1 |
aatagtacgtacttttt-atgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatat |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
30264777 |
aatagtacgtacttttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatat |
30264678 |
T |
|
| Q |
100 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30264677 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
30264578 |
T |
|
| Q |
200 |
attctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
299 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264577 |
attctatgatcaagattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
30264478 |
T |
|
| Q |
300 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30264477 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagc |
30264380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 30287411 - 30287808
Alignment:
| Q |
1 |
aatagtacgtactttt-tatgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatat |
99 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
30287411 |
aatagtacgtacttttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatat |
30287510 |
T |
|
| Q |
100 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30287511 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
30287610 |
T |
|
| Q |
200 |
attctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
299 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30287611 |
attctatgatcaagattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
30287710 |
T |
|
| Q |
300 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30287711 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagc |
30287808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 95 - 397
Target Start/End: Complemental strand, 30271576 - 30271274
Alignment:
| Q |
95 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
194 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||| |||||||| || || |||||||| | | |||||| | |||||||||| ||| ||| |
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|
| T |
30271576 |
tatataggtgagagacaaagatggcaaaatgaaatggaaaaaggtagaggtgaagcctgaagatcatatgcacgttccaatattccctaaaagtgaatca |
30271477 |
T |
|
| Q |
195 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
294 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||||||| | || || | |
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|
| T |
30271476 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatacatttaattaaat |
30271377 |
T |
|
| Q |
295 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatag |
394 |
Q |
| |
|
|||||||||| |||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30271376 |
atccaacaagaaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaag |
30271277 |
T |
|
| Q |
395 |
agc |
397 |
Q |
| |
|
||| |
|
|
| T |
30271276 |
agc |
30271274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 95 - 397
Target Start/End: Original strand, 30280613 - 30280915
Alignment:
| Q |
95 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
194 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
|
|
| T |
30280613 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30280712 |
T |
|
| Q |
195 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
294 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
|
|
| T |
30280713 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30280812 |
T |
|
| Q |
295 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatag |
394 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
30280813 |
atccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaag |
30280912 |
T |
|
| Q |
395 |
agc |
397 |
Q |
| |
|
||| |
|
|
| T |
30280913 |
agc |
30280915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 95 - 388
Target Start/End: Complemental strand, 30304643 - 30304350
Alignment:
| Q |
95 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
194 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
|
|
| T |
30304643 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30304544 |
T |
|
| Q |
195 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
294 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
|
|
| T |
30304543 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30304444 |
T |
|
| Q |
295 |
atccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtct |
388 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30304443 |
atccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtct |
30304350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 252 - 397
Target Start/End: Complemental strand, 30048723 - 30048578
Alignment:
| Q |
252 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtg |
351 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
30048723 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30048624 |
T |
|
| Q |
352 |
atggttactctctcatgggtgctcttctttcttgtcttcatagagc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30048623 |
atggttactctctcatgggtgctcttctttcttgtcttcaaagagc |
30048578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 252 - 397
Target Start/End: Complemental strand, 30063064 - 30062919
Alignment:
| Q |
252 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtg |
351 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
30063064 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30062965 |
T |
|
| Q |
352 |
atggttactctctcatgggtgctcttctttcttgtcttcatagagc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30062964 |
atggttactctctcatgggtgctcttctttcttgtcttcaaagagc |
30062919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 246 - 397
Target Start/End: Complemental strand, 30032483 - 30032332
Alignment:
| Q |
246 |
gaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcac |
345 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30032483 |
gaaagaacaccacaagataaaccactttgggaaattcatattatcaattatccaacaaccaatgaagcttgcaccataatattcaaacttcatcatgcac |
30032384 |
T |
|
| Q |
346 |
ttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagc |
397 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30032383 |
ttggtgacggttactctctcatgggtgctcttctttcttgtcttcaaagagc |
30032332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 264 - 397
Target Start/End: Complemental strand, 30228850 - 30228717
Alignment:
| Q |
264 |
aaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctc |
363 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30228850 |
aaaccactttgggaaattcatattatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttaatcatgcacttggtgatggttactctc |
30228751 |
T |
|
| Q |
364 |
tcatgggtgctcttctttcttgtcttcatagagc |
397 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| |
|
|
| T |
30228750 |
tcatgagtgctcttctttcttgtcttcaaagagc |
30228717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 259 - 397
Target Start/End: Original strand, 30220209 - 30220347
Alignment:
| Q |
259 |
aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggtta |
358 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || || |||||||||||||||||| || | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
30220209 |
aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggtta |
30220308 |
T |
|
| Q |
359 |
ctctctcatgggtgctcttctttcttgtcttcatagagc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30220309 |
ctctctcatgggtgctcttctttcttgtcttcaaagagc |
30220347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 79679 - 79567
Alignment:
| Q |
270 |
ctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgg |
369 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||| ||||| ||| ||| || ||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
79679 |
ctttgggagatacatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggttactctctaatgg |
79580 |
T |
|
| Q |
370 |
gtgctcttctttc |
382 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
79579 |
gtgcacttctttc |
79567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 72612 - 72506
Alignment:
| Q |
273 |
tgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtg |
372 |
Q |
| |
|
|||||||| ||| |||| || |||||||||| ||||| ||| ||| || ||||||||||||||||||||||||| |||||||||||||| ||||| | |
|
|
| T |
72612 |
tgggaaattcatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggttactctctaatgggag |
72513 |
T |
|
| Q |
373 |
ctcttct |
379 |
Q |
| |
|
||||||| |
|
|
| T |
72512 |
ctcttct |
72506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 2311381 - 2311448
Alignment:
| Q |
321 |
ataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtct |
388 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
2311381 |
ataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtct |
2311448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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