View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15743_high_4 (Length: 392)
Name: NF15743_high_4
Description: NF15743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15743_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 31 - 365
Target Start/End: Complemental strand, 13447396 - 13447062
Alignment:
| Q |
31 |
tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447396 |
tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttcgttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg |
13447297 |
T |
|
| Q |
131 |
ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgaga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13447296 |
ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgaga |
13447197 |
T |
|
| Q |
231 |
attactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggaggtttctccgacccaatggctgcagacgagcactt |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
13447196 |
attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt |
13447097 |
T |
|
| Q |
331 |
tgtggttcgcattcctgatagcttacctcttgatg |
365 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
13447096 |
tgtgattcgcattcctgatagcttacctcttgatg |
13447062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 43 - 365
Target Start/End: Complemental strand, 13419833 - 13419511
Alignment:
| Q |
43 |
aagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagta |
142 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| |||||| | || |||||||| ||||| |||||| ||||| ||||||| ||||| |||||||||||| |
|
|
| T |
13419833 |
aagaaatgagtagtaaataattgttcaatttgtttataatttatttaataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagta |
13419734 |
T |
|
| Q |
143 |
aaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcacca |
242 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||| | | |
|
|
| T |
13419733 |
gaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaa |
13419634 |
T |
|
| Q |
243 |
aatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggaggtttctccgacccaatggctgcagacgagcactttgtggttcgcat |
342 |
Q |
| |
|
|| ||| |||| || |||| ||||| |||||| |||| |||||||||| ||||||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
13419633 |
catttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcat |
13419534 |
T |
|
| Q |
343 |
tcctgatagcttacctcttgatg |
365 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13419533 |
tcctgatagcttacctcttgatg |
13419511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 98 - 365
Target Start/End: Complemental strand, 13426669 - 13426402
Alignment:
| Q |
98 |
aggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtc |
197 |
Q |
| |
|
||||| |||||| ||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13426669 |
aggcatgaacttgcgggtattgtaacagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtc |
13426570 |
T |
|
| Q |
198 |
gttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggagg |
297 |
Q |
| |
|
|||| || ||||||||||| || ||| |||||||||||||| || || | || |||| || ||||| ||||| ||||| |||| |||||||| |
|
|
| T |
13426569 |
gttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggagg |
13426470 |
T |
|
| Q |
298 |
tttctccgacccaatggctgcagacgagcactttgtggttcgcattcctgatagcttacctcttgatg |
365 |
Q |
| |
|
|| |||||| |||||| |||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13426469 |
ttattccgactcaatggttgcagatgagcactttgtgattcgcattcctgatagcttacctcttgatg |
13426402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 363
Target Start/End: Complemental strand, 13413445 - 13413168
Alignment:
| Q |
86 |
tgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatgg |
185 |
Q |
| |
|
||||||||||| ||||| || ||| ||||| |||||||||| || ||||||||||| | |||||||||||||||||||||||||| || || ||| || |
|
|
| T |
13413445 |
tgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttga |
13413346 |
T |
|
| Q |
186 |
ttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactat |
285 |
Q |
| |
|
||||||||||||| || || || ||||| ||| || |||||||||||||| |||||| | |||| || |||| ||||| ||| || | |
|
|
| T |
13413345 |
ttgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgt |
13413246 |
T |
|
| Q |
286 |
cacctatggaggtttctccgacccaatggctgcagacgagcactttgtggttcgcattcctgatagcttacctcttga |
363 |
Q |
| |
|
||| |||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||| | | |||||||||| |
|
|
| T |
13413245 |
cacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgacaacatacctcttga |
13413168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 13388988 - 13389108
Alignment:
| Q |
117 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc |
216 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
13388988 |
tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgt |
13389087 |
T |
|
| Q |
217 |
cgacgatattgagaattactg |
237 |
Q |
| |
|
||| || |||| |||||||| |
|
|
| T |
13389088 |
tgacaatcttgaaaattactg |
13389108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 13385167 - 13385288
Alignment:
| Q |
117 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc |
216 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || ||||| ||||||||||||| || ||| ||||||||| |
|
|
| T |
13385167 |
tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgt |
13385266 |
T |
|
| Q |
217 |
cgacgatattgagaattactgc |
238 |
Q |
| |
|
||| || |||| ||||||||| |
|
|
| T |
13385267 |
tgacaatcttgaaaattactgc |
13385288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 13454263 - 13454143
Alignment:
| Q |
117 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc |
216 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||| ||||||||||||| |||||| ||||||| | |||||||||| |||| || ||| ||||||||| |
|
|
| T |
13454263 |
tagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgt |
13454164 |
T |
|
| Q |
217 |
cgacgatattgagaattactg |
237 |
Q |
| |
|
|| || ||||||||||||| |
|
|
| T |
13454163 |
tgataatcttgagaattactg |
13454143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 13393403 - 13393477
Alignment:
| Q |
125 |
gaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgt |
199 |
Q |
| |
|
||||| |||||||||||| | ||||| ||| ||||||||||||| || ||||||| | | |||||||| |||||| |
|
|
| T |
13393403 |
gaggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgtgggatgcttagttgattcgtgtcgt |
13393477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 13454089 - 13454015
Alignment:
| Q |
291 |
atggaggtttctccgacccaatggctgcagacgagcactttgtggttcgcattcctgatagcttacctcttgatg |
365 |
Q |
| |
|
||||||| ||||| ||| |||||| | | ||||||||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
13454089 |
atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatg |
13454015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 47601570 - 47601530
Alignment:
| Q |
128 |
gtgggaagcaaagtaaaaaagtttaaagttggagacaaagt |
168 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
47601570 |
gtgggaagcaaagtagaaaagttcaaagttggagacaaagt |
47601530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
| Q |
271 |
tcgtggtggcactatcacctatggaggtttctccgacccaatggctgcagacgagcactttgtggttcgcattcc |
345 |
Q |
| |
|
||||| |||||| | ||| || ||||||| ||| ||| |||||| || |||||||||||||||||||| |||||| |
|
|
| T |
47601427 |
tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
47601353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University