View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15743_high_8 (Length: 356)

Name: NF15743_high_8
Description: NF15743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15743_high_8
NF15743_high_8
[»] chr5 (5 HSPs)
chr5 (112-284)||(11336209-11336381)
chr5 (6-101)||(11336058-11336153)
chr5 (179-284)||(43379448-43379553)
chr5 (297-345)||(11336399-11336449)
chr5 (179-284)||(43378572-43378677)
[»] chr6 (4 HSPs)
chr6 (245-284)||(13208225-13208264)
chr6 (224-282)||(3163534-3163592)
chr6 (125-167)||(10740746-10740788)
chr6 (179-284)||(13207346-13207451)
[»] chr2 (3 HSPs)
chr2 (231-278)||(3466658-3466705)
chr2 (112-177)||(8985740-8985805)
chr2 (231-284)||(39062863-39062916)
[»] chr8 (1 HSPs)
chr8 (193-259)||(3582072-3582138)
[»] chr7 (3 HSPs)
chr7 (231-284)||(35752377-35752430)
chr7 (112-177)||(46964298-46964363)
chr7 (231-279)||(46294693-46294741)
[»] chr4 (1 HSPs)
chr4 (112-177)||(16869676-16869741)
[»] chr3 (1 HSPs)
chr3 (179-247)||(40613800-40613868)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 112 - 284
Target Start/End: Original strand, 11336209 - 11336381
Alignment:
Q  112 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatatacgagttcatctttcttccattcaggaagcctcca 211  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11336209 gaagcgacgagtaatttaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatacacgagttcatctttcttccatttaggaagcctcca 11336308  T
Q  212 tttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 284  Q
    |||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11336309 ttttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 11336381  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 11336058 - 11336153
Alignment:
Q  6 tgtttcaacaaagagtcaatcggagtcaaataannnnnnnagcgacgaatgcacaataaccaacaaatacaatcagtcttcaatcaagataaagat 101  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  11336058 tgtttcaacaaagagtcaatcggagtcaaataatttttttagcgacgaatgcacaataaccaacaaatataatcagtcttcaatcaaaataaagat 11336153  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 43379553 - 43379448
Alignment:
Q  179 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 278  Q
    ||||||||||||  |||||| | |||| |||||||| ||||  ||||| | |||||||| ||||||||| |||| ||||||||||||||| |||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  279 ggtttg 284  Q
    ||||||    
T  43379453 ggtttg 43379448  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 11336399 - 11336449
Alignment:
Q  297 tagatgaaca--aaaaagcctacacgtgcgtctcctcttctcttctctctg 345  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  11336399 tagatgaacacaaaaaagcctacacgcgcgtctcctcttctcttctctctg 11336449  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 43378572 - 43378677
Alignment:
Q  179 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 278  Q
    ||||||||||||  |||||| | |||| ||||||||  |||  || || | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  43378572 gagttcatctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 43378671  T
Q  279 ggtttg 284  Q
    ||||||    
T  43378672 ggtttg 43378677  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 13208264 - 13208225
Alignment:
Q  245 gtgacaaacataaaagcaagggttaggattaaaaggtttg 284  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  13208264 gtgacaaaaataaaagcaagggttgggattaaaaggtttg 13208225  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 3163534 - 3163592
Alignment:
Q  224 cagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtt 282  Q
    |||||| |||||||  |||||||| |||| |||||| ||||||||||||| ||||||||    
T  3163534 cagtttatagatgtgcgacatgtgtcaaaaataaaaccaagggttaggatcaaaaggtt 3163592  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 10740788 - 10740746
Alignment:
Q  125 attcaagaagaatcaaaccatgctcttgataccatgtaaacaa 167  Q
    ||||||| || |||||||||||||||||||||||||| |||||    
T  10740788 attcaaggaggatcaaaccatgctcttgataccatgttaacaa 10740746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 13207346 - 13207451
Alignment:
Q  179 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 278  Q
    ||||||||||||  |||||| | |||| || |||||  |||  ||||| | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  13207346 gagttcatctttactccatttacgaaggctacatttaccccattccagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T
Q  279 ggtttg 284  Q
    | ||||    
T  13207446 gatttg 13207451  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 3466658 - 3466705
Alignment:
Q  231 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 278  Q
    ||||||| |||||| ||||||| |||||| ||||||||||||||||||    
T  3466658 tagatgtgtgacatatgacaaaaataaaatcaagggttaggattaaaa 3466705  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 8985805 - 8985740
Alignment:
Q  112 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 177  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  8985805 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 8985740  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 39062916 - 39062863
Alignment:
Q  231 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 284  Q
    ||||||||||||||||| |||  |||||| ||| || |||||||||||||||||    
T  39062916 tagatgtatgacatgtggcaacaataaaatcaatggctaggattaaaaggtttg 39062863  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 3582138 - 3582072
Alignment:
Q  193 tccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaa 259  Q
    |||||| |||||||||| |||| |||  ||| | |||||||||||||||||||||| ||| ||||||    
T  3582138 tccatttaggaagcctctatttatccatgtctattttttagatgtatgacatgtgagaaaaataaaa 3582072  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 35752377 - 35752430
Alignment:
Q  231 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 284  Q
    ||||||||||||||||| |||| |||||| ||| ||||  ||||||||||||||    
T  35752377 tagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaaaggtttg 35752430  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 46964298 - 46964363
Alignment:
Q  112 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 177  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  46964298 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 46964363  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 46294693 - 46294741
Alignment:
Q  231 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaag 279  Q
    ||||||| |||||| ||||||  |||||| |||||||||||||||||||    
T  46294693 tagatgtgtgacatatgacaataataaaatcaagggttaggattaaaag 46294741  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 16869741 - 16869676
Alignment:
Q  112 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 177  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  16869741 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 16869676  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 40613868 - 40613800
Alignment:
Q  179 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtg 247  Q
    ||||||||||||  |||||| || |||||||||||| |||| || || ||| ||||||| |||||||||    
T  40613868 gagttcatctttgctccatttagcaagcctccatttatccctgttcattttgtagatgtctgacatgtg 40613800  T

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