View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15743_low_2 (Length: 294)
Name: NF15743_low_2
Description: NF15743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15743_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 4223577 - 4223301
Alignment:
| Q |
10 |
tagattattcttatattaattaaaaagaaggaataaatagtatgataatagaaatgggatagggtttgcggtt--tggtggacatatatgaagctaaaaa |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
4223577 |
tagatttttcttatattaattaaaaagaaggaataaatagtattataatagaaatgggatagggttttcggttgatggtggacatatatgaagctaaaaa |
4223478 |
T |
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| Q |
108 |
agcttagtggtaattgattgtg-ttgtggttgaattctaatttgcttcctaaatatggtcatgctgtaatgtgaactagcacataaaaagtgcagctaaa |
206 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4223477 |
agcttagtggtaattgattgtaattgtggttgaattctaatttgcttcctaaatatggtcatgctgtaatgtgaactagtacataaaaagtgcagctaaa |
4223378 |
T |
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| Q |
207 |
attttgagtggaataaccaattgtaatgaaattgacataaaaaatttgatgagccttttagattatatttggtagtt |
283 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || |||||||||||| |
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| T |
4223377 |
attttgagtggaataaccaattgtaatgaaatttacataaaaaatttcatgagccttttagtttgtatttggtagtt |
4223301 |
T |
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