View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15744_high_10 (Length: 323)
Name: NF15744_high_10
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15744_high_10 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10129454 - 10129175
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
10129454 |
tttctgaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca |
10129355 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
|||| || || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10129354 |
actactccgtaaatcaatactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgc |
10129255 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
10129254 |
aatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagagaatagagtctcaagtgtgtaagacaagtgct |
10129175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 9852268 - 9851989
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| || ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9852268 |
tttctaaaatataaatggaatccagacttctccaatcatcaatgtcaagtgtttggagcacagggaaaccatcgagtggaaaggatttaagtgaatcaca |
9852169 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
9852168 |
gctacgatagaaccgaagactcacaagtgatgtgtagttgctccatgtttcaggaggtaggaaggataaattctcacaattttcaatatcaagtgattgc |
9852069 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
9852068 |
aatgaagtgggtagaccacttgatggaaatgcattgagagaagaaagtgaatcgagtctcaagtgtgtaagacaagtgct |
9851989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 9841387 - 9841108
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
9841387 |
tttctgaaatataaatggaatctagactcctacaatcaagtatggtaagtgtttggagcgcagggaaaccatcaagtgggaaggatgtaagtgtatcaca |
9841288 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
||| | | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
9841287 |
gctccaccataactgaagactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaactacgaatatgaagtgattgc |
9841188 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
9841187 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagtctcaagtgtgtaagacaagtgct |
9841108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10520014 - 10519735
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10520014 |
tttctgaaatataaatggaatccagactcctgcactcacatatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgtatcaca |
10519915 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
10519914 |
gctacgatagaacttaagactcacaagtgatgtgtaattgatccacgtttcaggaggaaggaaggataaattctcacaacattgaatattaagtgattgc |
10519815 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
10519814 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagtcccaagtgtgtaagacaagtgct |
10519735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 71 - 304
Target Start/End: Complemental strand, 10583094 - 10582861
Alignment:
| Q |
71 |
aagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcacagctacgatagaaccaaagactcacaagtgatgtgtagttgctccac |
170 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10583094 |
aagtgttcggagcgcagggaaaccatcaagtggaaaggatgtaagtgaatcacagctacgatagaactaaagactcacaagtgatgtgtagttgctccac |
10582995 |
T |
|
| Q |
171 |
gtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaa |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
10582994 |
gtttcaggaggtaggaaggataaattctcacaattttcgatatgaagtgattgcaatgaagtgggtagaccacttgagggaaatgtagtgagagaagaaa |
10582895 |
T |
|
| Q |
271 |
gagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |
|
|
| T |
10582894 |
gagaatagagtctcaagtgtgtaagacaagtgct |
10582861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 11779509 - 11779801
Alignment:
| Q |
12 |
tgagatgaaggtgtttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatg |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||||| ||||||||||||| ||||| ||||||| |
|
|
| T |
11779509 |
tgaggtgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatg |
11779608 |
T |
|
| Q |
112 |
taagtgaatcacagctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaat |
211 |
Q |
| |
|
|||||| |||||| |||| | || |||||||||||||||| ||||| |||||||||||||||| |||||| |||||||| |||||||| | | |||| |
|
|
| T |
11779609 |
taagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaat |
11779708 |
T |
|
| Q |
212 |
atgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11779709 |
atgaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaaatgct |
11779801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10263230 - 10262951
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10263230 |
tttctaaaatataaatggaatccagacttctacacttatatatgtcaagtgtttggagggcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
10263131 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||| | |||||||||| |
|
|
| T |
10263130 |
gctacgatttaactcaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattctcacaatttacaatttcaagtgattgc |
10263031 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||| |||||| ||| ||||||||||| |
|
|
| T |
10263030 |
aatgaagtgggtagaccacttgagggaaatgtagtgagagaaggaagagaactgagtttcaagtgtgttagacaagtgct |
10262951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 10361341 - 10361620
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10361341 |
tttctgaaatataaatggaatccagactcctacaatcacgtatggtaagtgttcggagcgcagggaaaccatcgagtggaaaggatgtaagtgaaccaca |
10361440 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
|||| ||| || ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
10361441 |
gctatgatctaaatgtagagtcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaattttcaatatgaagtgattgc |
10361540 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||| ||||||||||||||| |
|
|
| T |
10361541 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagattaccgagtcccaagagtgtaagacaagtgct |
10361620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10034532 - 10034253
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
10034532 |
tttctgaaatataaatggaaaccagactcctacaattccatatctgaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgcatcaca |
10034433 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
||| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10034432 |
actatgaattaaataaagactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacattttacaatatgaagtgattgc |
10034333 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
10034332 |
aatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagagaattgagttccaagtgtgtaagacaagtgct |
10034253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 10431581 - 10431860
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
||||| |||||||||||||||||||||| || |||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10431581 |
tttctgaaatataaatggaatccagacttctgcaattaaatatgtcaagtaattggagggcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
10431680 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
|| | | || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |
|
|
| T |
10431681 |
actgctccataaataaagactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatttcaagtgattgc |
10431780 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
10431781 |
aatgaagtgggtagaccacttgatggaaatgcagtgagagaagaaagagaatcgagtctcaagtgtgtaagacaagtgct |
10431860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 11771763 - 11771484
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
||||||||| || ||||||||||||||| |||||| || ||||||||||| || |||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
11771763 |
tttctaaaacattaatggaatccagactactacaaccatctatggtaagtgatttgagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca |
11771664 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
|||| | || |||||||||||||||| ||||| | |||||||||||||| |||||| |||||||| |||||||| | | ||||||||||| |||| |
|
|
| T |
11771663 |
actactccataaataaagactcacaagtgaagtgtaatagctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtatttgc |
11771564 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11771563 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
11771484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 10373382 - 10373661
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
10373382 |
tttctgaaatacaaatggaatccagattcctacaattcagtatcataagtgtttggaggacagggaaaccatcaagtggaaaggatataagtgaatcaca |
10373481 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
||||||||| || |||| | ||||||||||||||| ||||||||| ||||| |||| |||||||||||||||||||| | |||||| | |||||||||| |
|
|
| T |
10373482 |
gctacgatataaataaagccacacaagtgatgtgtaattgctccacatttcaagaggaaggaaggataaattctcacagtatctaatttcaagtgattgc |
10373581 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
10373582 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagttccaagtgtgtaagacaagtgct |
10373661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 10666004 - 10665716
Alignment:
| Q |
16 |
atgaaggtgtttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaag |
115 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10666004 |
atgaaggactttctaaaatacaaatggaaaccagactcctacaattctgtatccaaagtgtttggagcgcagggaaaccatcaagtggaaaggatgtaag |
10665905 |
T |
|
| Q |
116 |
tgaatcacagctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatga |
215 |
Q |
| |
|
|| |||||| || || | || |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
10665904 |
tgcatcacaactttgacataaatctagacgcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaccacaaaatatta |
10665805 |
T |
|
| Q |
216 |
agtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||| |
|
|
| T |
10665804 |
agtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagtgaatagagtgccaagtgtgtaagacaagtgct |
10665716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10091323 - 10091044
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
||||||||| || ||||||||||||||| |||||| || ||||||||||| || |||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
10091323 |
tttctaaaacattaatggaatccagactactacaaccatctatggtaagtgatttgagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca |
10091224 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
|||| || || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||| | || ||||||| |
|
|
| T |
10091223 |
gctatgacttaaataaagtctcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattcaaacaaaattcaatttcaattgattgc |
10091124 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| | || ||| |||||||||| |||| |||||| | |||||||||||| |
|
|
| T |
10091123 |
aatgaagtgggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacaagtgct |
10091044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10198205 - 10197926
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
||||||||| || ||||||||||||||| |||||| || ||||||||||| || |||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
10198205 |
tttctaaaacattaatggaatccagactactacaaccatctatggtaagtgatttgagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca |
10198106 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
|||| || || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||| | || ||||||| |
|
|
| T |
10198105 |
gctatgacttaaataaagtctcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattcaaacaaaattcaatttcaattgattgc |
10198006 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| | || ||| |||||||||| |||| |||||| | |||||||||||| |
|
|
| T |
10198005 |
aatgaagtgggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacaagtgct |
10197926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 13853001 - 13853241
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| | | ||| |||| ||||||| |||||||||||||| ||| | ||||||||||||| |||||| |
|
|
| T |
13853001 |
tttctaaaatattaatggaatccagattcctacactcacttatccgaagtctttggagtgcagggaaaccatcaagttggaaggatgtaagtgcatcaca |
13853100 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
||||| || ||||||| |||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||| || | |||||||||| |
|
|
| T |
13853101 |
gctactccgtaaagtaagactcgcaagcgatgtgtaattgctccatgtttcaggaggaaggaatgataaattctcacatttttctatttcaagtgattgc |
13853200 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagaga |
265 |
Q |
| |
|
|||| ||| || |||||||||| |||||| |||||||||| |
|
|
| T |
13853201 |
aatggagttggcagaccacttgacggaaatacagtgagaga |
13853241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 10503099 - 10502894
Alignment:
| Q |
37 |
aaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcacagctacgatagaa |
136 |
Q |
| |
|
|||||||||||| | ||||||| ||| ||| ||||| ||||||| |||||||||||||| |||||||||||||| ||| ||||||||||| | || |
|
|
| T |
10503099 |
aaatggaatccaaattcctacagttactaatgttaagtctttggagtgcagggaaaccatcaagtggaaaggatgttagtccatcacagctactccataa |
10503000 |
T |
|
| Q |
137 |
ccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggt |
236 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| ||| || ||||||||||||||||| || ||||| |||||| ||||| ||||||||| |
|
|
| T |
10502999 |
atcaagactcacaagcaatgtgtaattgctccacgtttcagcaggaagaaaggataaattctcacaccttttaatactaagtgactgcaaagaagtgggt |
10502900 |
T |
|
| Q |
237 |
agacca |
242 |
Q |
| |
|
|||||| |
|
|
| T |
10502899 |
agacca |
10502894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 11244188 - 11244303
Alignment:
| Q |
150 |
agtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagaccacttgggg |
249 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| | ||| | ||||| || | ||||||||||| |||||| ||||||||||||||| ||| | |
|
|
| T |
11244188 |
agtgatgtgtaattgctccacgtttcaggaggtaggaatgttaagctgtcacaattgcgaatatgaagtgtttgcaaagaagtgggtagaccatttgtag |
11244287 |
T |
|
| Q |
250 |
gaaatgcagtgagaga |
265 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11244288 |
gaaatgcagtgagaga |
11244303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 10531136 - 10530973
Alignment:
| Q |
79 |
ggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcacagctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcagg |
178 |
Q |
| |
|
|||| |||||||||||||| ||| | ||||||||||||| ||||||||||| | || ||||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
10531136 |
ggagtgcagggaaaccatcaagttggaaggatgtaagtgcatcacagctactccataaaataagactctcaagcgatgtgtatctgctccacgtttcagg |
10531037 |
T |
|
| Q |
179 |
aggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagacca |
242 |
Q |
| |
|
||| | ||| | ||| |||||||| || |||| |||||| ||||||||||||||||||||| |
|
|
| T |
10531036 |
aggcatgaatgctaacttctcacaattatcaatacaaagtgactgcaatgaagtgggtagacca |
10530973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 10679935 - 10679812
Alignment:
| Q |
79 |
ggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcacagctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcagg |
178 |
Q |
| |
|
|||| |||||||||||||| ||| | ||||||||||||| ||||||||||| | || |||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
10679935 |
ggagtgcagggaaaccatcaagttggaaggatgtaagtgcatcacagctactccataaaataagactcacaagcgatgtatatctgctccacgtttcagg |
10679836 |
T |
|
| Q |
179 |
aggtaggaaggataaattctcaca |
202 |
Q |
| |
|
||| | ||| | ||| |||||||| |
|
|
| T |
10679835 |
aggcatgaatgctaacttctcaca |
10679812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 13397889 - 13397764
Alignment:
| Q |
145 |
tcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattt-tctaatatgaagtgattgcaatgaagtgggtagaccac |
243 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| | | ||| | |||||||| ||| | |||| || ||||||| ||||| |||||||| |||||| |
|
|
| T |
13397889 |
tcacaagtgatgtgtaattgctccatgtttcaggacgcaagaatgctaaattctgacactcatcta-tacgaagtgactgcaacgaagtgggaagaccat |
13397791 |
T |
|
| Q |
244 |
ttgggggaaatgcagtgagagaagaaa |
270 |
Q |
| |
|
||| ||||||||||||||||| |||| |
|
|
| T |
13397790 |
ttgctggaaatgcagtgagagaggaaa |
13397764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 10085799 - 10085732
Alignment:
| Q |
16 |
atgaaggtgtttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagc |
83 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| || |||||||| | ||||| ||||||||||||| |
|
|
| T |
10085799 |
atgaaggactttctaaaataaaaatggaatccaaacacctacaatcacgtatgtcaagtgtttggagc |
10085732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 10192719 - 10192652
Alignment:
| Q |
16 |
atgaaggtgtttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagc |
83 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| || |||||||| | ||||| ||||||||||||| |
|
|
| T |
10192719 |
atgaaggactttctaaaataaaaatggaatccaaacacctacaatcacgtatgtcaagtgtttggagc |
10192652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 270
Target Start/End: Original strand, 10967364 - 10967488
Alignment:
| Q |
146 |
cacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagaccactt |
245 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||||| | ||| | |||||||| ||| | ||||| |||||| | |||||||||||| || ||| | |
|
|
| T |
10967364 |
cacaagtgatgtgtaattgctccacatttccggaggcaagaatgctaaattcttacagtcggaaatatcaagtgacttcaatgaagtgggaagtccatta |
10967463 |
T |
|
| Q |
246 |
gggggaaatgcagtgagagaagaaa |
270 |
Q |
| |
|
| | ||||||||||||||| |||| |
|
|
| T |
10967464 |
gatgaaaatgcagtgagagaggaaa |
10967488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 55142 - 55421
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
124 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||| || |||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
55142 |
tttctgaaatacaaatggaaaccagactcctacatctacttatgtcaagtgtttggagggcagggaaaccatcaagtggaaaggatgtaagtgaatcaca |
55241 |
T |
|
| Q |
125 |
gctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgc |
224 |
Q |
| |
|
||| | | |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55242 |
actatatgatatattaagactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgc |
55341 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
55342 |
aatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagtgaatggagtttcaagtgtgtaagacaagtgct |
55421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 26909425 - 26909154
Alignment:
| Q |
17 |
tgaaggtgtttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagt |
116 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| ||||||||||| | || |||| ||||||| |||||||||||||| || ||||| ||| |||| |
|
|
| T |
26909425 |
tgaaggagtttctgaaatataaatggaatccacactcctacaatcgtaaattttaagactttggagagcagggaaaccatcaagcggaaatgattcaagt |
26909326 |
T |
|
| Q |
117 |
gaatcacagctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaa |
216 |
Q |
| |
|
| |||||||||| |||| ||| || |||||||||||||||| |||||||| |||||| |||||||||||||||||||| ||| | ||| | || |
|
|
| T |
26909325 |
gcatcacagctatgatataactcaatgttcacaagtgatgtgtaattgctccaggtttcaagaggtaggaaggataaattcaaacaaaattcaatttcaa |
26909226 |
T |
|
| Q |
217 |
gtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | || ||| |||||||||| |||| |||||| |
|
|
| T |
26909225 |
ttgattgcaatgaagtgggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagtttcaagt |
26909154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 11487567 - 11487342
Alignment:
| Q |
16 |
atgaaggtgtttctaaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaag |
115 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| |||||||| || || | ||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11487567 |
atgaaggactttctaaaataaaaatggaatccagacacctacaatcatatagttttagtctttggagcgcagggaaaccatcaagtggaaaggatgtaag |
11487468 |
T |
|
| Q |
116 |
tgaatcacagctacgatagaaccaaagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatga |
215 |
Q |
| |
|
|| ||||||||||| | | ||| ||| |||||| || |||| |||||||||||||||||||| ||||| |||||||||||||| | || | | |
|
|
| T |
11487467 |
tgcatcacagctactaaataactcaagcgacacaagagacttgtaattgctccacgtttcaggaggaaggaatgataaattctcacaactatgaacacaa |
11487368 |
T |
|
| Q |
216 |
agtgattgcaatgaagtgggtagacc |
241 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
11487367 |
agtgattgcaatgaagtaggtagacc |
11487342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 44955211 - 44955303
Alignment:
| Q |
37 |
aaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgaatcacagctac |
129 |
Q |
| |
|
|||| |||||||||||||||||| | ||| ||||| |||||||| ||||||||||||| ||||| || ||| |||||| ||||||||||| |
|
|
| T |
44955211 |
aaattgaatccagactcctacaaccactaatgttaagtctttggagcacagggaaaccatcaagtgggaatgatttaagtgcatcacagctac |
44955303 |
T |
|
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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 17850581 - 17850674
Alignment:
| Q |
140 |
aagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtg |
233 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||||||||||| | |||||||||||||| ||| | |||||||||||||| |||||||||||| |
|
|
| T |
17850581 |
aagactcgcaagtgatgtgtaattgttccacgtttcaggaggcatgaaggataaattcttacacatactaatatgaagtgactgcaatgaagtg |
17850674 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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