View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15744_high_11 (Length: 314)
Name: NF15744_high_11
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15744_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 44830588 - 44830318
Alignment:
| Q |
20 |
agagagtctagaaaagtatggatggtcaatcccaattaccagatttgatatgcacttttatcaaaatattggaatgtatgcctattgttagtctcaaata |
119 |
Q |
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| T |
44830588 |
agagagtctagaaaagtatggatggtcaatcccaattaccagatttgatatgcacttttatcaaaatattggaatgtatacctattgttagtctcaatta |
44830489 |
T |
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| Q |
120 |
tgtatgtatttttcaggctaagtgacaaatattttgcagttttcacatgatcagcacatgaatttcagacatcagctatacattgttaattaatcacatt |
219 |
Q |
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| T |
44830488 |
tgtatgtatttttcaggctaagtgacaaatgctttgcagttttcacatgatcagcacatgaatttcagacatcagc--tacattgttaattaatcacat- |
44830392 |
T |
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| Q |
220 |
ttagtttagttcaaaatgttttcaaaccaacataaacaaattaaaatcactgatttttactagaattagcgatgttta |
297 |
Q |
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| T |
44830391 |
----tttagttcaaaatgtcttcaaaccaacataaacaaattaaaatcactgactttaactagaattagcgatgttta |
44830318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 41818021 - 41818175
Alignment:
| Q |
113 |
tcaaatatgtatgtatttttcaggctaagtgacaaatattttgcagttttcacatgatcagc--acatgaatttcagacatcagctatacattgttaatt |
210 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||| ||| |||||| ||||||||||||| |
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| T |
41818021 |
tcaaatatgtatgtatttttcaggttaagtgacaaatgttttgcagttttcacatgatcagcgtacatgttttttagaaatcagc--tacattgttaatt |
41818118 |
T |
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| Q |
211 |
aatcacattttagtttagttcaaaatgt--tttcaaaccaacataaacaaattaaaatcac |
269 |
Q |
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| T |
41818119 |
aatcac-ttttagtt---ctaaaagtttaatttgaaaccaacataaacaaattaaaatcac |
41818175 |
T |
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