View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15744_high_16 (Length: 307)

Name: NF15744_high_16
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15744_high_16
NF15744_high_16
[»] chr5 (1 HSPs)
chr5 (20-307)||(2222844-2223131)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 2222844 - 2223131
Alignment:
Q  20 taagaggaagttgtcaaatattatggatgatcctaataatattgttgccgacaatattaataaatctaaagaaattgagcggcgttacgatgattataga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2222844 taagaggaagttgtcaaatattatggatgatcctaataatattgttgccgacaatattaataaatctaaagaaattgagcggcgttacgatgattataga 2222943  T
Q  120 aggaagagaaagcgtccatgcaaagtggcggtggttcctacgatggaatcaaccaccggagaaaccgccaccacgtcacatggttttatatcggtgattg 219  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2222944 aggaagagaaagcgtccatgcaaagtggcagtggttcctacgatggaatcaaccaccggagaaaccgccaccgcgtcacatggttttatatcggtgattg 2223043  T
Q  220 ggcggaggagggtgatggaagatgctattaaggtgattccacgttttgtggcgacggagcagcaactgtgcggttatgatttctttgc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  2223044 ggcggaggagggtgatggaagatgctattaaggtgattccacgttttgtggcggcggagcagcaaccgtgcggttatgatttctttgc 2223131  T

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