View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15744_high_2 (Length: 599)
Name: NF15744_high_2
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15744_high_2 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: scaffold0393 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 19 - 582
Target Start/End: Complemental strand, 10350 - 9787
Alignment:
| Q |
19 |
tgttcaaccggtttgattttagagaatgcagaatatcaaagaggaagaggtgaatcgttgccagattcaggaatggtacccaattttcaaatctgtatcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10350 |
tgttcaaccggtttgattttagagaatgcagaatataaaagaggaagaggtgaatcgttgccagattcaggaatggtacccaattttcaaatctgtatcc |
10251 |
T |
|
| Q |
119 |
atcaagaccttaattcatcaacttcctgaatctttcattcaataccttcttgacgactcgggacccttcctattgcctgtttctgtcttaaacgaagatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10250 |
atcaagaccttaattcatcaacttcctgaatctttcattcaataccttcttgacgactcgggacccttcctattgcctgtttctgtcttaaacgaagatg |
10151 |
T |
|
| Q |
219 |
cattgccgaatagaattcataatcctactgatgaggaagattttcaggtgtcagagggatctgaagatgaagcagaagaatcttctccacccccttcttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10150 |
cattgccgaatagaattcataatcctactgatgaagaagattttcaggtgtcagaggaatctgaagatgaagcagaagaatcttctccacccccttcttt |
10051 |
T |
|
| Q |
319 |
tccagaactcgagttacaagttaaggaatccgttaagtcgcttggtggtgcagtcttttccaaattgaattggagctccccaaaagattcagcttggata |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10050 |
tccagaactcgagttacaagttaaggaatccgttaagttgcttggtggtgcagtctttcccaaattgaattggagctccccaaaagattcagcttggata |
9951 |
T |
|
| Q |
419 |
agtgcttctggctctcttcgctgcactactttcagtgagattgcacttctgttccgatcatccgactcattagtccacgacttgtgtcatgcttatgatt |
518 |
Q |
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| T |
9950 |
agtacttctggctctcttcgctgcactactttcagtgagattgcacttctgttccgatcatccgactcattagtccacgacttgtgtcatgcttatgatt |
9851 |
T |
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| Q |
519 |
cctgcaatgataaatcttcatctagacctcataatttcttccttgctctgcgtaaatggtatcc |
582 |
Q |
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| T |
9850 |
cctgcaatgataaatcttcatctagacctcataatttcttccttgctctgcgtaaatggtatcc |
9787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 19 - 582
Target Start/End: Complemental strand, 2407793 - 2407230
Alignment:
| Q |
19 |
tgttcaaccggtttgattttagagaatgcagaatatcaaagaggaagaggtgaatcgttgccagattcaggaatggtacccaattttcaaatctgtatcc |
118 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2407793 |
tgttcaaccggtttgatttaagagaatgcagaatataaaagaggaagaggtgaatcgttgccagattcaggaatggtacccaattttcaaatctgtatcc |
2407694 |
T |
|
| Q |
119 |
atcaagaccttaattcatcaacttcctgaatctttcattcaataccttcttgacgactcgggacccttcctattgcctgtttctgtcttaaacgaagatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2407693 |
atcaagaccttaattcatcaacttcctgaatctttcattcagtaccttcttgacgacttgggacccttcctattgcctgtttctgttttaaacgaagatg |
2407594 |
T |
|
| Q |
219 |
cattgccgaatagaattcataatcctactgatgaggaagattttcaggtgtcagagggatctgaagatgaagcagaagaatcttctccacccccttcttt |
318 |
Q |
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||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2407593 |
cattgccgaatagaattcataatcctattgatgaagaagactttcaggtgtcagagggatctgaagatgaagcagaagaatcttctccacccccttcttt |
2407494 |
T |
|
| Q |
319 |
tccagaactcgagttacaagttaaggaatccgttaagtcgcttggtggtgcagtcttttccaaattgaattggagctccccaaaagattcagcttggata |
418 |
Q |
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||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2407493 |
tccagaactcgagttgcaagttaaggaatccgttgagtcacttggtggtgcagtctttcccaaattgaattggagctccccaaaagattcagcttggata |
2407394 |
T |
|
| Q |
419 |
agtgcttctggctctcttcgctgcactactttcagtgagattgcacttctgttccgatcatccgactcattagtccacgacttgtgtcatgcttatgatt |
518 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2407393 |
agtacttctggctctcttcgctgcactactttcagtgagattgcacttctgttccgatcatccgactcattagtccacgacttgtgtcatgcttatgatt |
2407294 |
T |
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| Q |
519 |
cctgcaatgataaatcttcatctagacctcataatttcttccttgctctgcgtaaatggtatcc |
582 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2407293 |
cctgcgatgataaatcttcatctagacctcataatttcttccttgctctgcgtaaatggtatcc |
2407230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 373 - 582
Target Start/End: Complemental strand, 21478390 - 21478181
Alignment:
| Q |
373 |
cttttccaaattgaattggagctccccaaaagattcagcttggataagtgcttctggctctcttcgctgcactactttcagtgagattgcacttctgttc |
472 |
Q |
| |
|
|||| ||||| |||||||||| ||||||| |||||||||||||||||| ||||||| | ||||||||||| | ||| | |||| ||| ||| ||||| |
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| T |
21478390 |
ctttcccaaactgaattggagtgccccaaaggattcagcttggataagtacttctggtacccttcgctgcaccaatttaaatgaggttgtgcttttgttc |
21478291 |
T |
|
| Q |
473 |
cgatcatccgactcattagtccacgacttgtgtcatgcttatgattcctgcaatgataaatcttcatctagacctcataatttcttccttgctctgcgta |
572 |
Q |
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||| ||||||||||||||||||| |||||||| |||||||||||||| ||| | |||||| | ||||| |||| || |||||||| |||||||| |||| |
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| T |
21478290 |
cgagcatccgactcattagtccatgacttgtgccatgcttatgattcttgccacgataaaattacatctcgaccccagaatttctttcttgctctccgta |
21478191 |
T |
|
| Q |
573 |
aatggtatcc |
582 |
Q |
| |
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|||||||||| |
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| T |
21478190 |
aatggtatcc |
21478181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 119 - 298
Target Start/End: Complemental strand, 21478582 - 21478406
Alignment:
| Q |
119 |
atcaagaccttaattcatcaacttcctgaatctttcattcaataccttcttgacgactcgggacccttcctattgcctgtttctgtcttaaacgaagatg |
218 |
Q |
| |
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|||||||||||||||||| ||||| ||||| ||| || | ||||||||||| ||||| || | |||| | || ||| ||| ||||||||||| |||| |
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| T |
21478582 |
atcaagaccttaattcataaactttctgaacattttgttgattaccttcttgatgactctgggcacttcttgttacctacttcagtcttaaacgaggatg |
21478483 |
T |
|
| Q |
219 |
cattgccgaatagaattcataatcctactgatgaggaagattttcaggtgtcagagggatctgaagatgaagcagaagaa |
298 |
Q |
| |
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|| | || |||||||| ||||||||| ||||| |||||||||||||||||||||||||| || |||||||| |||||| |
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| T |
21478482 |
cactacccaatagaatgcataatcct---gatgatgaagattttcaggtgtcagagggatccgatgatgaagcggaagaa |
21478406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 432 - 562
Target Start/End: Complemental strand, 30598090 - 30597958
Alignment:
| Q |
432 |
ctcttcgctgcactactttcagtgagattgcacttctgttccgatcatccgactcattagtccacgacttgtg--tcatgcttatgattcctgcaatgat |
529 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||| |||| | ||||| ||||||||||||| |||||||| | ||||| |||| || ||| ||||| |
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| T |
30598090 |
ctcttggctgcaccactttcagtgagattgcacttcttttccaagcatccaactcattagtccatgacttgtgccttatgctaatgactcttgccatgat |
30597991 |
T |
|
| Q |
530 |
aaatcttcatctagacctcataatttcttcctt |
562 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |
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| T |
30597990 |
aaatcttcatctagaccgcataatttcttcctt |
30597958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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