View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15744_high_3 (Length: 573)
Name: NF15744_high_3
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15744_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 13 - 558
Target Start/End: Original strand, 10293343 - 10293890
Alignment:
| Q |
13 |
attattctacataggtatgatgattcacatatttgaccattgtcaagagtttattttaagtcttgag---attctatcttgtaaactagcttctgtttct |
109 |
Q |
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| T |
10293343 |
attattctacataggtatgatgattcacttatttgaccattgtcaagagtttattctaagtcttgaggtaattctatcttgtaaactagcttctgtttct |
10293442 |
T |
|
| Q |
110 |
aacgtccttgttgtgatgcatgcttaccgaaaatcatacttctttcctatgtcctacaggaggggagaaactctaaatgaattgctattattggaatgga |
209 |
Q |
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| T |
10293443 |
aacgtccttgttgtgatgcatgcttcccgaaaatcatacttctttcctatgtcctacaggaggggagaaactctaaatgaattgctattattggaatgga |
10293542 |
T |
|
| Q |
210 |
atgttaaatcacagacaacaactgttgtttctcagtatgttgaagatgggcctctagcacataacattgttgaagttcccaactcaaagggacttgcata |
309 |
Q |
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| T |
10293543 |
atgttaaatcacagacaacaactgttgtttctcagtatgttgaagatgggcctctagcacataacattgttgaagttcccaactcaaagggacttgcatt |
10293642 |
T |
|
| Q |
310 |
tttgtttagggctggtgatggtctcttaatgaactttagagatccttgcaatccattttttgtgtataggactagcttgaattcttttcccgttgccgtg |
409 |
Q |
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| T |
10293643 |
tttgtttagg-ctggtgatggtctcttaatgaactttagagatccttgcaatccattttttgtgtataggactagcttgaattcttttcccgttgccgtg |
10293741 |
T |
|
| Q |
410 |
gaagacttgtgtattagaggaactaggaaagacgcaacattgaataaaaaggtagtgtagtgtctgaaaccctgttattattctgaatactctgatcaat |
509 |
Q |
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| T |
10293742 |
gaagacttgtgtattagaggaactaggaaagacgcaacattgaataaaaaggtagtgtagtgtctgaaaccctgttattattctgaatactctgatcaat |
10293841 |
T |
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| Q |
510 |
gagtcgaactatgaattcaatgataagatgattttgagaatacctttct |
558 |
Q |
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| T |
10293842 |
gagtcgaactatgaattcaatgataagatgattttgagaatacctttct |
10293890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 162 - 390
Target Start/End: Complemental strand, 43799608 - 43799380
Alignment:
| Q |
162 |
cctacaggaggggagaaactctaaatgaattgctattattggaatggaatgttaaatcacagacaacaactgttgtttctcagtatgttgaagatgggcc |
261 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| | | |||| |||||||||||||||||| ||| || |
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| T |
43799608 |
cctacaggaggggagctcttctaaatgaattgctcttattggaatggaatgttaaagcacatatagtctctgtcatttctcagtatgttgaagctggacc |
43799509 |
T |
|
| Q |
262 |
tctagcacataacattgttgaagttcccaactcaaagggacttgcatatttgtttagggctggtgatggtctcttaatgaactttagagatccttgcaat |
361 |
Q |
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| T |
43799508 |
tctagcacataacattgttgaagttcctaactctccgggacttgcgtttctattcagggctggtgatgttctgttaatggatcttagagatcctcacaat |
43799409 |
T |
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| Q |
362 |
ccattttttgtgtataggactagcttgaa |
390 |
Q |
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||||| | |||||| | |||| ||||||| |
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| T |
43799408 |
ccattatgtgtgtacaagacttgcttgaa |
43799380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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