View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15744_high_4 (Length: 565)

Name: NF15744_high_4
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15744_high_4
NF15744_high_4
[»] chr7 (10 HSPs)
chr7 (17-503)||(7553084-7553570)
chr7 (467-558)||(38609281-38609373)
chr7 (465-558)||(5578951-5579048)
chr7 (467-551)||(28369273-28369357)
chr7 (467-558)||(39894794-39894881)
chr7 (467-552)||(321936-322021)
chr7 (476-558)||(22797523-22797604)
chr7 (466-530)||(3120840-3120904)
chr7 (467-558)||(23839292-23839382)
chr7 (471-503)||(29907213-29907245)
[»] chr2 (17 HSPs)
chr2 (17-313)||(1138697-1138996)
chr2 (467-558)||(23220958-23221049)
chr2 (466-558)||(2007159-2007251)
chr2 (467-558)||(14931958-14932049)
chr2 (468-550)||(13220138-13220220)
chr2 (467-558)||(17625741-17625833)
chr2 (467-558)||(17670128-17670220)
chr2 (467-558)||(24201232-24201322)
chr2 (467-558)||(25432780-25432870)
chr2 (361-466)||(1139005-1139113)
chr2 (466-539)||(3304544-3304617)
chr2 (467-503)||(38500599-38500635)
chr2 (468-550)||(33896832-33896914)
chr2 (508-553)||(35942136-35942181)
chr2 (518-558)||(37469328-37469368)
chr2 (462-501)||(21933194-21933233)
chr2 (467-545)||(11493767-11493845)
[»] chr8 (10 HSPs)
chr8 (467-558)||(32690291-32690382)
chr8 (466-550)||(33085281-33085365)
chr8 (467-558)||(32593514-32593605)
chr8 (467-558)||(7066204-7066295)
chr8 (466-558)||(8471890-8471982)
chr8 (467-550)||(8472668-8472751)
chr8 (467-553)||(18471265-18471351)
chr8 (467-558)||(33493882-33493975)
chr8 (466-542)||(8194356-8194432)
chr8 (465-498)||(32051748-32051781)
[»] chr3 (6 HSPs)
chr3 (471-553)||(26218770-26218852)
chr3 (467-552)||(48596867-48596952)
chr3 (467-553)||(20269951-20270037)
chr3 (469-550)||(28767629-28767710)
chr3 (480-553)||(55242339-55242412)
chr3 (480-552)||(44399638-44399709)
[»] chr1 (7 HSPs)
chr1 (467-552)||(32755005-32755090)
chr1 (471-549)||(46859659-46859737)
chr1 (466-558)||(37827839-37827931)
chr1 (467-558)||(45395795-45395885)
chr1 (466-558)||(25104805-25104896)
chr1 (467-503)||(14613883-14613919)
chr1 (467-503)||(19972614-19972650)
[»] chr5 (6 HSPs)
chr5 (466-558)||(27828410-27828502)
chr5 (470-558)||(7518858-7518946)
chr5 (467-558)||(43432173-43432264)
chr5 (466-550)||(23498381-23498465)
chr5 (467-558)||(4446382-4446472)
chr5 (488-558)||(27827602-27827672)
[»] chr4 (15 HSPs)
chr4 (466-558)||(41223927-41224019)
chr4 (466-545)||(16184704-16184783)
chr4 (466-549)||(47442115-47442198)
chr4 (465-558)||(39437171-39437263)
chr4 (467-558)||(44897981-44898072)
chr4 (467-536)||(28501935-28502004)
chr4 (467-560)||(37078990-37079082)
chr4 (467-553)||(22383977-22384058)
chr4 (466-500)||(32476734-32476768)
chr4 (467-553)||(50853897-50853983)
chr4 (466-553)||(34249594-34249673)
chr4 (467-560)||(37078261-37078353)
chr4 (518-558)||(6848700-6848740)
chr4 (467-503)||(13188076-13188112)
chr4 (467-558)||(49529487-49529575)
[»] chr6 (1 HSPs)
chr6 (469-550)||(15869445-15869526)


Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 503
Target Start/End: Original strand, 7553084 - 7553570
Alignment:
Q  17 ataaatttcatgaagtttgacaaggtaatttataattgttcattgcctttatcagacaagggtgatctggatactagttcagaattttttcaaatgtgtg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7553084 ataaatttcatgaagtttgacaaggtaatttataattgttcatcgcctttatcagacaagggtgatctggatactagttcagaattttttcaaatgtgtg 7553183  T
Q  117 ggaaacctagtaaaacttggtgttgcccatggggttttgcaatggttgatgacattgcaccagccttcaaagccattttggaagataatttcttgtcatt 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7553184 ggaaacctagtaaaacttggcgttgcccatggggttttgcaatggttgatgacattgcaccagccttcaaagccattttggaagataatttcttgtcatt 7553283  T
Q  217 ttcgtctaattttgaacatacagaacataataggatgttatgttggaagcaaagactcaacattgatcgtcgtcttgaaaagtttttgaggtgcactgct 316  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7553284 ttcatctaattttgaaaatacagaacataataggatgttatgttggaagcaaagactcaacattgatcgtcgtcttgaaaagtttttgaggtgcactact 7553383  T
Q  317 gaatgatttcatcaatttgcaaactttgatttaagaatgtatcatgcatcttttgcatcatttctttgttgttgaacaattatgtaacactcgctttata 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7553384 gaatgatttcatcaatttgcaaactttgatttaagaatgtatcatgcatcttttgcatcatttctctgttgttgaacaattatgtaacactcgctttata 7553483  T
Q  417 tattcatactaacaaacttgaaatttaatagcagtatgcacgatgacatctgttaaaattaagaatctttagatattcctttaattg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7553484 tattcatactaacaaacttgaaatttaatagcagtatgcacgatgacatctgttaaaattaagaatctttagatattcctttaattg 7553570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 38609281 - 38609373
Alignment:
Q  467 tgttaaaattaagaatctttagatattcc-tttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||||||||||||||||||||||||| |||||||| |  ||||||||| ||||||||||||| |||||||||||||||||||||| ||||    
T  38609281 tgttaaaattaagaatctttagatattccctttaattgtacaacttcctaaattgattgttattactcctagagtatacaacttcctaggcta 38609373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 465 - 558
Target Start/End: Original strand, 5578951 - 5579048
Alignment:
Q  465 tctgttaaaattaagaatctttagatattcctttaattg----cattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||||||||||||||||||||||||||||||||||     || ||||||||  ||||||||||||| | |||||||||||||||||||| ||||    
T  5578951 tctgttaaaattaagaatctttagatattcctttaattgaactgatgacttcctagattgattgttattacttctagagtatacaacttcctaggcta 5579048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 467 - 551
Target Start/End: Original strand, 28369273 - 28369357
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcc 551  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||||||  |||||||  |||| ||||||||||||||||||||    
T  28369273 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgccattactcctagagtatacaacttcc 28369357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 39894794 - 39894881
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||   ||||||||||||    |||||||||||||||||||| ||||    
T  39894794 tgttaaaattaagaatcttcagatattcctttaattgtataacttcctgcattgattgttatt----ctagagtatacaacttcctaggcta 39894881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 552
Target Start/End: Original strand, 321936 - 322021
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcct 552  Q
    |||||||||||||||||||||||||||||||||| |  |  ||||||||  |||||| |||| | ||||||||||| |||||||||    
T  321936 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 322021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 558
Target Start/End: Original strand, 22797523 - 22797604
Alignment:
Q  476 taagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||||||||||||||| |||||| | |  ||| ||||  |||||||||||||  ||||||||||||||||||||| ||||    
T  22797523 taagaatctttagatattc-tttaatggtacaactccctagattgattgttattacccctagagtatacaacttcctaagcta 22797604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 3120904 - 3120840
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttatta 530  Q
    ||||||||| ||||||| |||||||||||||||||||| |  ||||||||  |||||||| ||||    
T  3120904 ctgttaaaagtaagaatatttagatattcctttaattgtacaacttcctagattgattgtcatta 3120840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 23839292 - 23839382
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||| |||||||||||||||||||||||| |||  |  ||||||||  ||||||| ||| | |||||||||||  ||||||||| ||||    
T  23839292 tgttaaagttaagaatctttagatattcctttgattatacaacttcctagattgattg-tataactcctagagtatttaacttcctaggcta 23839382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 503
Target Start/End: Original strand, 29907213 - 29907245
Alignment:
Q  471 aaaattaagaatctttagatattcctttaattg 503  Q
    |||||||| ||||||||||||||||||||||||    
T  29907213 aaaattaaaaatctttagatattcctttaattg 29907245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 1138697 - 1138996
Alignment:
Q  17 ataaatttcatgaagtttgacaaggtaatttataattgttcattgcctttatcagacaagggtgatctggatactagttcagaattttttcaaatgtgtg 116  Q
    ||||||||||||||||| |||||  |||||||||| |||||||   |||| | |||  |||||||||||  |||| ||||||| ||||| ||||||||||    
T  1138697 ataaatttcatgaagttagacaatttaatttataactgttcatcatcttttttagatgagggtgatctgagtactggttcagactttttgcaaatgtgtg 1138796  T
Q  117 ggaaacctagtaaaacttggtgttgcccatgg---ggttttgcaatggttgatgacattgcaccagccttcaaagccattttggaagataatttcttgtc 213  Q
     ||||||| |||||   ||| |||| ||||||   ||||   |||||||||||||||||||||||||||||||| |||||||| |||| |||| || |||    
T  1138797 agaaacctggtaaagtctggcgttgtccatggggtggttccacaatggttgatgacattgcaccagccttcaaaaccattttgaaagagaattactcgtc 1138896  T
Q  214 attttcgtctaattttgaacatacagaacataataggatgttatgttggaagcaaagactcaacattgatcgtcgtcttgaaaagtttttgaggtgcact 313  Q
     |   |||||  |||||||  ||||||||| |||| || | |||| ||| |    ||| ||||  |||||||||||||||  ||||||||||||||||||    
T  1138897 gtcaacgtctctttttgaaactacagaacagaatatgaggctatggtgggattggagaatcaatgttgatcgtcgtcttgctaagtttttgaggtgcact 1138996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 23220958 - 23221049
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||||||  ||||||| ||||| ||||||||||| |||||||||||||||    
T  23220958 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgatattactcctagagtattcaacttcctatgcta 23221049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 466 - 558
Target Start/End: Complemental strand, 2007251 - 2007159
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||  ||||||||||||| ||||| ||||||||| |||||| ||||    
T  2007251 ctgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttattactcctatagtatacaatttcctaggcta 2007159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 467 - 558
Target Start/End: Complemental strand, 14932049 - 14931958
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||||||||||||||||||||||| ||||||||| |  |||||||| ||||||| |||||| |||||||||||||| ||||||| ||||    
T  14932049 tgttaaaattaagaatctttagatatttctttaattgtacaacttcctaggttgatttttattactcctagagtatacatcttcctaggcta 14931958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 468 - 550
Target Start/End: Complemental strand, 13220220 - 13220138
Alignment:
Q  468 gttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttc 550  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||||  || |||||||||| |||||||||||||||||||    
T  13220220 gttaaaattaagaatctttagatattcctttaattgtacaacttcctagtttaattgttattactcctagagtatacaacttc 13220138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 17625741 - 17625833
Alignment:
Q  467 tgttaaaa-ttaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||| |||||||||||||||||||  ||||| || |  ||||||||  ||||||||||||| ||||||||||| |||||||||| ||||    
T  17625741 tgttaaaagttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggcta 17625833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 17670128 - 17670220
Alignment:
Q  467 tgttaaaa-ttaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||| |||||||||||||||||||  ||||| || |  ||||||||  ||||||||||||| ||||||||||| |||||||||| ||||    
T  17670128 tgttaaaagttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggcta 17670220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 24201232 - 24201322
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||| |||||||||||||||||| |||||||||| |  ||||||||  ||||||| ||| | ||||||||||| |||||||||| ||||    
T  24201232 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattg-tataactcctagagtattcaacttcctaggcta 24201322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 558
Target Start/End: Complemental strand, 25432870 - 25432780
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||||||| || ||||| || |||||||||||| |  ||||||||  ||||||||||||| ||||||||||||||| |||||| ||||    
T  25432870 tgttaaaattaaaaa-ctttatatgttcctttaattgtacaacttcctagattgattgttattactcctagagtatacaatttcctaggcta 25432780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 466
Target Start/End: Original strand, 1139005 - 1139113
Alignment:
Q  361 tgcatcttttgcatcatttctttgttgttgaacaattatgtaacactcgctttatatattca-tactaacaaacttgaaattt--aatagcagtatgcac 457  Q
    ||||| ||||||||||||||| ||| ||||||||| |||| ||||||| ||||||| ||||| | | ||||||| | ||||||  ||||||||||||||     
T  1139005 tgcatgttttgcatcatttctctgtagttgaacaactatggaacactcactttatacattcatttccaacaaacgtaaaatttaaaatagcagtatgcat 1139104  T
Q  458 gatgacatc 466  Q
    ||| |||||    
T  1139105 gattacatc 1139113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 466 - 539
Target Start/End: Original strand, 3304544 - 3304617
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagag 539  Q
    |||| ||||||| ||||||| ||||||||||||||||| |  ||||||||  ||||||||||||| ||||||||    
T  3304544 ctgtaaaaattaggaatcttcagatattcctttaattgtacaacttcctagattgattgttattactcctagag 3304617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 503
Target Start/End: Original strand, 38500599 - 38500635
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattg 503  Q
    |||||||||||||||||||||||||||||||||||||    
T  38500599 tgttaaaattaagaatctttagatattcctttaattg 38500635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 550
Target Start/End: Complemental strand, 33896914 - 33896832
Alignment:
Q  468 gttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttc 550  Q
    ||||||||||||||||| |||||||||||||||||| |   |||||||  |||||| || ||| | ||||||||||| |||||    
T  33896914 gttaaaattaagaatctctagatattcctttaattgtacagcttcctagattgattatttttactgctagagtatactacttc 33896832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 508 - 553
Target Start/End: Complemental strand, 35942181 - 35942136
Alignment:
Q  508 acttcctaagttgattgttattattcctagagtatacaacttccta 553  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||    
T  35942181 acttcctagattgattgttattattcctagagtaaacaacttccta 35942136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 558
Target Start/End: Complemental strand, 37469368 - 37469328
Alignment:
Q  518 ttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  37469368 ttgattgttattactcctagagtatacaacttcctaggcta 37469328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 501
Target Start/End: Original strand, 21933194 - 21933233
Alignment:
Q  462 acatctgttaaaattaagaatctttagatattcctttaat 501  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  21933194 acatctggtaaaattaagaatgtttagatattcctttaat 21933233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 545
Target Start/End: Original strand, 11493767 - 11493845
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtataca 545  Q
    ||||||||||||||||||| ||| ||| ||||||||| |  ||||||||  ||  ||||||||| ||||||| ||||||    
T  11493767 tgttaaaattaagaatcttaagaaattactttaattgtacaacttcctagatttgttgttattactcctagaatataca 11493845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 467 - 558
Target Start/End: Complemental strand, 32690382 - 32690291
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||| ||||    
T  32690382 tgttaaaattaagaatctttagacattcctttaattgtataacttcctaggttgattgttattactcctagagtatacaacttcctaggcta 32690291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 33085281 - 33085365
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttc 550  Q
    ||||||||||||||||||||||||| |||||||||||| | |||||||||  ||||||| ||||| |||||| ||||||||||||    
T  33085281 ctgttaaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctagggtatacaacttc 33085365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 32593514 - 32593605
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||||||||||||| |||||||||||||||||| |  ||||||||  |||||||||  || |||||||||||||||||||||| ||||    
T  32593514 tgttaaaattaagaatctatagatattcctttaattgtacaacttcctagattgattgttcctactcctagagtatacaacttcctaggcta 32593605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 467 - 558
Target Start/End: Complemental strand, 7066295 - 7066204
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||| ||||||||||||||||||||||||||||  |  ||||||||  ||||||||| ||| ||||||||||| |||||||||| ||||    
T  7066295 tgttaaagttaagaatctttagatattcctttaattatacaacttcctagattgattgttgttactcctagagtattcaacttcctaggcta 7066204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 466 - 558
Target Start/End: Original strand, 8471890 - 8471982
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||| |||||||||||||||||| |||||||||| |  ||||||||  ||||||||||||| || |||||||| ||||| |||| ||||    
T  8471890 ctgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattgttattactcgtagagtattcaactccctaggcta 8471982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 550
Target Start/End: Original strand, 8472668 - 8472751
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttc 550  Q
    ||||||| |||||||||||||||||| |||||||||| |  ||||||||  ||| ||||||||| ||| ||||||| |||||||    
T  8472668 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattggttgttattactccaagagtattcaacttc 8472751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 553
Target Start/End: Complemental strand, 18471351 - 18471265
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttccta 553  Q
    ||||||| |||| |||||||| || |||||||||||| |  ||||||||  ||||||||||||| | ||| ||||||||||||||||    
T  18471351 tgttaaagttaacaatctttacatgttcctttaattgtacaacttcctagattgattgttattacttctaaagtatacaacttccta 18471265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 558
Target Start/End: Complemental strand, 33493975 - 33493882
Alignment:
Q  467 tgttaaaattaagaatctttagatat--tcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||||||||||||||||||||||  ||||||||||  |  ||||||||  |||| |||||||| ||||||||||| |||||| ||| ||||    
T  33493975 tgttaaaattaagaatctttagatatattcctttaattctacaacttcctagattgagtgttattactcctagagtattcaactttctaggcta 33493882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 542
Target Start/End: Original strand, 8194356 - 8194432
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtat 542  Q
    |||||||| |||||| ||||||| ||||| |||||||| |  ||||||||  ||||||||||||| |||| ||||||    
T  8194356 ctgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtat 8194432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 498
Target Start/End: Complemental strand, 32051781 - 32051748
Alignment:
Q  465 tctgttaaaattaagaatctttagatattccttt 498  Q
    ||||||||||||||||||||| ||||||||||||    
T  32051781 tctgttaaaattaagaatcttcagatattccttt 32051748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 471 - 553
Target Start/End: Original strand, 26218770 - 26218852
Alignment:
Q  471 aaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttccta 553  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||  ||||||||||||||||||||| |||||||| |||||    
T  26218770 aaaattaagaatctttagatattcctttaattgtataacttcatagattgattgttattattcctagaatatacaacatccta 26218852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 467 - 552
Target Start/End: Complemental strand, 48596952 - 48596867
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcct 552  Q
    |||||||||||||||| |||||||||||||||||||  || ||||||||  ||||||||||||| |||||||||||| ||||||||    
T  48596952 tgttaaaattaagaatttttagatattcctttaattttataacttcctagattgattgttattactcctagagtataaaacttcct 48596867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 467 - 553
Target Start/End: Complemental strand, 20270037 - 20269951
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttccta 553  Q
    ||||||||||||||||||||||||||||||||||||| |  | ||||||  ||||||||||||| ||||| | ||||||||||||||    
T  20270037 tgttaaaattaagaatctttagatattcctttaattgtacaatttcctagattgattgttattactcctacactatacaacttccta 20269951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 469 - 550
Target Start/End: Complemental strand, 28767710 - 28767629
Alignment:
Q  469 ttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttc 550  Q
    |||||||||| |||||||| |||||| |||||||| |  ||||||||  |||||||||||||   |||||||||||||||||    
T  28767710 ttaaaattaaaaatctttaaatattcatttaattgtacaacttcctagattgattgttattacaactagagtatacaacttc 28767629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 553
Target Start/End: Original strand, 55242339 - 55242412
Alignment:
Q  480 aatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttccta 553  Q
    ||||| ||| ||||||||||| || |  ||||||||  |||||||||| ||| |||||||||||||||||||||    
T  55242339 aatctgtagttattcctttaaatgtacaacttcctagattgattgttaatatccctagagtatacaacttccta 55242412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 552
Target Start/End: Complemental strand, 44399709 - 44399638
Alignment:
Q  480 aatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcct 552  Q
    ||||| |||||||||||||||||  |  ||||||||  |||||||||||| || |||||||||||||||||||    
T  44399709 aatctgtagatattcctttaattatacaacttcctagattgattgttatt-tttctagagtatacaacttcct 44399638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 467 - 552
Target Start/End: Complemental strand, 32755090 - 32755005
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcct 552  Q
    ||||||||||||||||||| |||||||||| |||||| |  ||||||||  ||||||||||||| |||||||||||||||||||||    
T  32755090 tgttaaaattaagaatcttcagatattcctctaattgtaaaacttcctagattgattgttattactcctagagtatacaacttcct 32755005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 471 - 549
Target Start/End: Complemental strand, 46859737 - 46859659
Alignment:
Q  471 aaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaactt 549  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||  ||||||||| ||| ||||||||||||||||||    
T  46859737 aaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttgttactcctagagtatacaactt 46859659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 466 - 558
Target Start/End: Original strand, 37827839 - 37827931
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||| |||||||||||||||||||||||| |||||||| |  ||||||||  | ||||||||||| ||||| | |||||||||||||| ||||    
T  37827839 ctgtaaaaattaagaatctttagatattcatttaattgtacaacttcctagatcgattgttattactcctacaatatacaacttcctaggcta 37827931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 45395795 - 45395885
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||| |||||||||||||||||| |||||||||| |  ||||||||  ||||||| ||| | ||||||||||| |||||||||| ||||    
T  45395795 tgttaaagttaagaatctttagatatccctttaattgtacgacttcctagattgattg-tataactcctagagtattcaacttcctaggcta 45395885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 558
Target Start/End: Complemental strand, 25104896 - 25104805
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||| |||||||||||||||||| |||||||||| |  ||||||||  ||||||  ||| | ||||||||||| |||||||||| ||||    
T  25104896 ctgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatt-atataactcctagagtattcaacttcctaggcta 25104805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 503
Target Start/End: Original strand, 14613883 - 14613919
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattg 503  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  14613883 tgttaaagttaagaatctttagatatccctttaattg 14613919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 503
Target Start/End: Complemental strand, 19972650 - 19972614
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattg 503  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  19972650 tgttaaaattaagaatcttcagaaattcctttaattg 19972614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 466 - 558
Target Start/End: Complemental strand, 27828502 - 27828410
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||||||| ||||||||||||||||| ||||||| |  ||||||||  ||||||||||||| ||||||| |||||||||||||| ||||    
T  27828502 ctgttaaaattatgaatctttagatattcccttaattgtacaacttcctagattgattgttattactcctagaatatacaacttcctaggcta 27828410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 7518858 - 7518946
Alignment:
Q  470 taaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||||| |||||||||||||||||||| || |  ||||||||  |||| |||||||| |||||||||||||||||||||| ||||    
T  7518858 taaaattaagcatctttagatattcctttaactgtacaacttcctagattgactgttattactcctagagtatacaacttcctaggcta 7518946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 467 - 558
Target Start/End: Complemental strand, 43432264 - 43432173
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||||||||||||||| | ||||||||||||||| |  ||||| ||  ||||||||||||||||||| ||||| |||||||||| ||||    
T  43432264 tgttaaaattaagaatcttcatatattcctttaattgtacaacttcgtagattgattgttattattcctaaagtatgcaacttcctaggcta 43432173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 23498465 - 23498381
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttc 550  Q
    ||||| ||||||||||||||||||| |||||||||||| | |||||||||  ||||||| ||||| |||| | ||||||||||||    
T  23498465 ctgttgaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctggggtatacaacttc 23498381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 4446382 - 4446472
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||| |||||||| ||||||||| |||||||||| |  ||||||||  |||||||| || | ||||||||||| |||||||||| ||||    
T  4446382 tgttaaagttaagaatatttagatatccctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggcta 4446472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 558
Target Start/End: Complemental strand, 27827672 - 27827602
Alignment:
Q  488 gatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||| ||||||| |  ||||||||  ||| ||||||| | |||||||||||||||||||||| ||||    
T  27827672 gatattcccttaattgtacaacttcctagattggttgttataactcctagagtatacaacttcctaggcta 27827602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 466 - 558
Target Start/End: Original strand, 41223927 - 41224019
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||||||| |||||||||||||||||| ||||||| || |  ||||||||  ||||||||||||| ||| |||||||||||||||||| ||||    
T  41223927 ctgttaaagttaagaatctttagatatgcctttaactgtacaacttcctagattgattgttattactccaagagtatacaacttcctaggcta 41224019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 466 - 545
Target Start/End: Original strand, 16184704 - 16184783
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtataca 545  Q
    ||||||||| ||||||||||||||||||| |||||||| |  |||||||    |||||||||||||||||||||||||||    
T  16184704 ctgttaaaagtaagaatctttagatattcttttaattgtacaacttcctcgactgattgttattattcctagagtataca 16184783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 466 - 549
Target Start/End: Complemental strand, 47442198 - 47442115
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaactt 549  Q
    |||||||||||||||||||||||  |||||||| |||  || ||||||||  ||||| ||||||| ||||||||||||||||||    
T  47442198 ctgttaaaattaagaatctttaggaattcctttcattctataacttcctagtttgatagttattactcctagagtatacaactt 47442115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 558
Target Start/End: Original strand, 39437171 - 39437263
Alignment:
Q  465 tctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||||| |||||||||||||||||| |||||||||| |  ||||||||  |||||| |||| | ||||||||||| |||||||||| ||||    
T  39437171 tctgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatt-ttataactcctagagtattcaacttcctaggcta 39437263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 558
Target Start/End: Complemental strand, 44898072 - 44897981
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    |||| |||||||||||||||| ||||||||||||||| |  |||||| |  ||||||||||||| ||| |||||||||  ||||||| ||||    
T  44898072 tgttgaaattaagaatctttacatattcctttaattgtacaacttcccagattgattgttattactccaagagtatactccttcctaggcta 44897981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 536
Target Start/End: Complemental strand, 28502004 - 28501935
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattccta 536  Q
    ||||||| ||||||||||||||||||||||||||||| |  ||||||||  |||||||| |||| |||||    
T  28502004 tgttaaagttaagaatctttagatattcctttaattgtacaacttcctagattgattgtaattactccta 28501935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 560
Target Start/End: Original strand, 37078990 - 37079082
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgctact 560  Q
    ||||||| |||||||||||||||||| ||||||| || |  ||||||||  ||||||| ||| | ||||||||||| |||||||||| ||||||    
T  37078990 tgttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgattg-tataactcctagagtattcaacttcctaggctact 37079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 553
Target Start/End: Original strand, 22383977 - 22384058
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttccta 553  Q
    |||||||||||||||||||||||||||||     ||| |  ||||| ||  ||||||||||||||||||| ||||||||| ||||||    
T  22383977 tgttaaaattaagaatctttagatattcc-----ttgtacaacttcttagattgattgttattattcctatagtatacaatttccta 22384058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 500
Target Start/End: Complemental strand, 32476768 - 32476734
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaa 500  Q
    |||||||||||||||||||||||||||||||||||    
T  32476768 ctgttaaaattaagaatctttagatattcctttaa 32476734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 553
Target Start/End: Original strand, 50853897 - 50853983
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttccta 553  Q
    |||||||||||||| |||| ||||||||||||||||| |  || | |||  ||||||||||||| ||| | | ||||||||||||||    
T  50853897 tgttaaaattaagattcttaagatattcctttaattgtacaacattctagattgattgttattactcccacaatatacaacttccta 50853983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 553
Target Start/End: Complemental strand, 34249673 - 34249594
Alignment:
Q  466 ctgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttccta 553  Q
    |||||||||||||||||| |||||||||||| ||||||   |||     || || |||||||||| ||||||||||||||||||||||    
T  34249673 ctgttaaaattaagaatccttagatattcctataattg---tac-----aacttaattgttattactcctagagtatacaacttccta 34249594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 560
Target Start/End: Original strand, 37078261 - 37078353
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgctact 560  Q
    ||||||| |||||||||||||||||| ||||||| || |  ||||||||  ||||||| ||| | ||||||||||| |||||| ||| ||||||    
T  37078261 tgttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgattg-tataactcctagagtattcaactttctaggctact 37078353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 558
Target Start/End: Complemental strand, 6848740 - 6848700
Alignment:
Q  518 ttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  6848740 ttgattgttattactcctagagtatacaacttcctaggcta 6848700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 503
Target Start/End: Original strand, 13188076 - 13188112
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattg 503  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13188076 tgttaaaattaagtatctttagatattcctttaattg 13188112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 49529487 - 49529575
Alignment:
Q  467 tgttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttcctatgcta 558  Q
    ||||||| ||||||||||||||  || |||||||||| |  ||||||||  ||||||| ||| | ||||||||||| |||||||||| ||||    
T  49529487 tgttaaagttaagaatctttag--atccctttaattgtacaacttcctagattgattg-tataactcctagagtattcaacttcctaggcta 49529575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 469 - 550
Target Start/End: Complemental strand, 15869526 - 15869445
Alignment:
Q  469 ttaaaattaagaatctttagatattcctttaattgcattacttcctaagttgattgttattattcctagagtatacaacttc 550  Q
    |||||||||||||||||||||||||||||| || | |  ||| ||||  ||||||||||||| ||||||||||| |||||||    
T  15869526 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttc 15869445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University