View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15744_high_5 (Length: 489)
Name: NF15744_high_5
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15744_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 33571844 - 33571371
Alignment:
| Q |
1 |
tcatcaagaacaacatcacctagttcattatcttctgatcaattagcatcgccaggatcttcatcattttcttcattttcttcctcaggcactcctaata |
100 |
Q |
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| T |
33571844 |
tcatcaagaacaacatcacctagttcattatcttctgatcaattagcatcgccaggatcttcatcattttcttcattttcttcctcaggcactcctaata |
33571745 |
T |
|
| Q |
101 |
atatgccacagaagaataatgtggatgaaaagcacctttgggatggtccagcaattgaagagattttgattgattccgatgatgataaagatggagaaat |
200 |
Q |
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| T |
33571744 |
atatgccacagaagaataatgtggatgaaaagcacctttgggatggtccagcaattgaagagattttgattgattccgatgatgataaagatggagaaat |
33571645 |
T |
|
| Q |
201 |
gggaaaaccaaaaggatttgttagtgaaatgtgttcaaagattattggtggtaatgatcgtgaaaagattgaatttagatgcatctctgatgttgggagg |
300 |
Q |
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| T |
33571644 |
gggaaaaccaaaaggatttgttagtgaaatgtgttcaaagattattggtggtaatgatcgtgaaaagattgaatttagatgcatctctgatgttgggagg |
33571545 |
T |
|
| Q |
301 |
aaggttactnnnnnnngatatgatcgacaatcttcactttggttttaaattaagaattgtatgtatgatccattgttattgtatttatactatataatat |
400 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33571544 |
aaggttactaaaaaaagatatgatcgacaatattcactttggttttaaattaagaattgtatgtatgatccattgttattgtatatatactatataatat |
33571445 |
T |
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| Q |
401 |
atttttagaaaatgtaacatgcatgacatgcatgttagtcattcatcactatatacggatgtccctcagttttg |
474 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||| |
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| T |
33571444 |
atttttagaaaatgtaccatgcatgacatgcatgttagttattcagcactatgtacaagtgtccctcagttttg |
33571371 |
T |
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