View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15744_high_8 (Length: 347)
Name: NF15744_high_8
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15744_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 15590002 - 15589637
Alignment:
| Q |
1 |
gaaagaggggccatgcatcaagtttcgtggacctacaatcagagcacgttcacatgatggaacaaactagaagatccctaaatttaatnnnnnnnn-gcg |
99 |
Q |
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| T |
15590002 |
gaaagaggggccaggcatcaaatttcgtggacctacaatcagagcacgttcacatgatggaacaaacttgaagacccccaaatttaataaaaaaaaagtg |
15589903 |
T |
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| Q |
100 |
taaagtgagaggtgtcactatttataaactcattttagacttgtcnnnnnnncacaagagtctggtacatgcgtctgatta------------------- |
180 |
Q |
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| T |
15589902 |
taaagtgagaggtgtcactatttataaactcattttagacttgtcaaaaaa-cacaagagtctggtacatgcgtctgattagacaaagaatggcgtctga |
15589804 |
T |
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| Q |
181 |
taatcacaatcatgcaggtgatcctctaatggaacaggttccttctgatcaatgacatagtgaaaaccaaggctcctctactgcaacattgcatcaatca |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15589803 |
taatcacaatcatgcaggtgatcctctaatggaacaggttccttctgatcaatgacatagtgaaaaccaaggctcctctactccaacattgcatcaatca |
15589704 |
T |
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| Q |
281 |
agccaagccatgaatttggaacaaagtgtatgttcatggaatccaagtcaaatcatgttactgatat |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15589703 |
agccaagccatgaatttggaacaaagtgtatgttcatggaatccaagtcaaatcatgttactgatat |
15589637 |
T |
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