View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15744_low_1 (Length: 602)
Name: NF15744_low_1
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15744_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 26 - 589
Target Start/End: Complemental strand, 51011010 - 51010444
Alignment:
| Q |
26 |
atatatatagttacctccatctgctgtgtctgcttgtcagtaacat---taccaacatcttcttgcttttgttttgaaacatagccattcccaacatgaa |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51011010 |
atatatatagttacctccatctgctgtgtctgcttgtcagtaacaacagtaccaacatcttcctgcttttgttttgatacatagccattcccaacatgaa |
51010911 |
T |
|
| Q |
123 |
aaccatgttctgcttttgtaacattgttattattatttggtttaacttgaacaccatcaacatatacgcagttactttcagttcctgtttctgaattttc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51010910 |
aaccatgttctgcttttgtaacattgttattattatttgctttaacttgaacaccatcaacatatacgcagttactttcagttcctgtttctgaattttc |
51010811 |
T |
|
| Q |
223 |
ctcaagttcatcttgaagttccttcacttgtttctgcaaatccttcacaaattcaatagcatcaccaagaatagaagctctatcaagctttgagattctt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51010810 |
ctcaagttcatcttgaagttccttcacttgcttctgcaaatccttcacaaattcaatagcatcaccaagaatagaagctctatcaagctttgagattctt |
51010711 |
T |
|
| Q |
323 |
ggaaccaatgaacgaaggttatataacctatcattcagtttcttccttctttttctctcagcaacaaggttctttgattggtttccttttccacttcttc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51010710 |
ggaaccaatgaacgaaggttatataacctatcattcagtttcttccttctttttctctcagcaacaaggttctttgattggtttccttttccacttcttc |
51010611 |
T |
|
| Q |
423 |
tcctatattttccatcatcctcttcttcattttgatcactgcaatctgacattgaatctgatctgccaacaacattttcttgcttcttttttgtgtctaa |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51010610 |
tcctatattttccatcatcctcttcttcattttgatcactgcaatctgacattgaatctgatctgccaacaacattttcttgcttcttttttgtgtctaa |
51010511 |
T |
|
| Q |
523 |
aggatccacaaacatatattgattattttctgtcatcaagcttttgttatcatgttcctcttctgtg |
589 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51010510 |
aggatccacaaacacatattgattattttctgtcatcaagcttttgctatcatgttcctcttctgtg |
51010444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 51014126 - 51014077
Alignment:
| Q |
76 |
aacatcttcttgcttttgttttgaaacatagccattcccaacatgaaaac |
125 |
Q |
| |
|
|||| |||| || |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51014126 |
aacaccttcctgtttttgttttgaaacatagccattcggaacatgaaaac |
51014077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University