View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15744_low_11 (Length: 347)

Name: NF15744_low_11
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15744_low_11
NF15744_low_11
[»] chr1 (1 HSPs)
chr1 (1-347)||(15589637-15590002)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 15590002 - 15589637
Alignment:
Q  1 gaaagaggggccatgcatcaagtttcgtggacctacaatcagagcacgttcacatgatggaacaaactagaagatccctaaatttaatnnnnnnnn-gcg 99  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||         | |    
T  15590002 gaaagaggggccaggcatcaaatttcgtggacctacaatcagagcacgttcacatgatggaacaaacttgaagacccccaaatttaataaaaaaaaagtg 15589903  T
Q  100 taaagtgagaggtgtcactatttataaactcattttagacttgtcnnnnnnncacaagagtctggtacatgcgtctgatta------------------- 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||                       
T  15589902 taaagtgagaggtgtcactatttataaactcattttagacttgtcaaaaaa-cacaagagtctggtacatgcgtctgattagacaaagaatggcgtctga 15589804  T
Q  181 taatcacaatcatgcaggtgatcctctaatggaacaggttccttctgatcaatgacatagtgaaaaccaaggctcctctactgcaacattgcatcaatca 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15589803 taatcacaatcatgcaggtgatcctctaatggaacaggttccttctgatcaatgacatagtgaaaaccaaggctcctctactccaacattgcatcaatca 15589704  T
Q  281 agccaagccatgaatttggaacaaagtgtatgttcatggaatccaagtcaaatcatgttactgatat 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15589703 agccaagccatgaatttggaacaaagtgtatgttcatggaatccaagtcaaatcatgttactgatat 15589637  T

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