View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15744_low_21 (Length: 278)
Name: NF15744_low_21
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15744_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 36000084 - 36000326
Alignment:
| Q |
10 |
gcaaaggttgatatggttcattgcagaaatttggataatcttcattgttgtaatgtagcacactaatttgatcgatagttaattaaaaaggtataaatgg |
109 |
Q |
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| T |
36000084 |
gcaaaggttgatatggttcattgcagaaatttggataatcttcattgctgtaatgtagcacactaatttgatcgatagttaattaaaaaggtataaatgg |
36000183 |
T |
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| Q |
110 |
ccaaatttcacaaactgcaacatcataatgcattgtaaataaaaacataatcatcgttgattaataccaacaaaagcaagacacaaaagaactgaataaa |
209 |
Q |
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| T |
36000184 |
ccaaatttcac-----------tcataatgcatagtaaataaaaacataatcatcgttgattaataccaacaaaagcaagacacaaaagaactgaataaa |
36000272 |
T |
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| Q |
210 |
attaggaagatttctacaatgagaaagtctcttaacagttttaccgttgcactt |
263 |
Q |
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| T |
36000273 |
attaggaagatttctacaatgagaaagtctcttaacagttttaccattgcactt |
36000326 |
T |
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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 16118816 - 16118897
Alignment:
| Q |
147 |
aataaaaacataatcatcgttgattaataccaacaaaagcaagacacaaaagaactgaataaaattaggaagatttctacaa |
228 |
Q |
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| T |
16118816 |
aataaaaacacaatcattattgattaataccaacaaaaacaagatacaaaataactgaataaaattaggaagatttctacaa |
16118897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 16340845 - 16340764
Alignment:
| Q |
147 |
aataaaaacataatcatcgttgattaataccaacaaaagcaagacacaaaagaactgaataaaattaggaagatttctacaa |
228 |
Q |
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| T |
16340845 |
aataaaaacacaatcattattgattaataccaacaaaaacaagatacaaaataactgaataaaattaggaagatttctacaa |
16340764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 12898919 - 12898867
Alignment:
| Q |
176 |
ccaacaaaagcaagacacaaaagaactgaataaaattaggaagatttctacaa |
228 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12898919 |
ccaataaaatcaagacacaaaagaactgaataaaattaggaagatttctacaa |
12898867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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