View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15744_low_22 (Length: 276)
Name: NF15744_low_22
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15744_low_22 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15084316 - 15084508
Alignment:
| Q |
1 |
agtttaaaagcttttagctacacttttagcattatagcaccttggaaatatcttttggtgcgtctgatggttaatatttatcttttcatacaattcttaa |
100 |
Q |
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| T |
15084316 |
agtttataagcttttagctacacttttagcattatagcaccttggaaatatcttttggtgagtctgatggttaatatttatcttttcatacaattctt-a |
15084414 |
T |
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| Q |
101 |
gagtacagtactaaactacttatcttttcaacttgttcaatgttgtctaaagtgctggaggtaaatagaaggtactatgctaattatggttgtt |
194 |
Q |
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| T |
15084415 |
gagtacagtactaaactacttatcttttcaacttgttcaatgttgtctaaagtgctggaagtaaatagaaggtactatgctaattatggttgtt |
15084508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 15057272 - 15057337
Alignment:
| Q |
199 |
caattcctttgttgttgaaaatatattgcaatagc-nnnnnnnatttctttcaaaatcgaggtgat |
263 |
Q |
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| T |
15057272 |
caattcctttgttgttaaaaatatattgcaatagcttttttttatttctttcaaaatcgaggtgat |
15057337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 8985 - 8804
Alignment:
| Q |
12 |
ttttagctacacttttagcattatagcaccttggaaatatcttttggtgcgtctgatggttaatatttatcttttcatacaattcttaagagtacagtac |
111 |
Q |
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| T |
8985 |
ttttagctacacttttagcattatagcaccttggaaatatcttttggtgagtctgatggttaatatttatcttttcatacaattctta-gagtacagtac |
8887 |
T |
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| Q |
112 |
taaactacttatcttttcaacttgttcaatgttgtctaaagtgctggaggtaaatagaaggtactatgctaattatggttgtt |
194 |
Q |
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| T |
8886 |
taaactacttatcttttcaacttgttcaatgttgtctaaagtgctggaagtaaatagaaggtactatgctaattatggttgtt |
8804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 2406429 - 2406238
Alignment:
| Q |
1 |
agtttaaaagcttttagctacacttttagcattatagcaccttggaaatatcttttggtgcgtctgat-ggttaatatttatcttttcatacaattctta |
99 |
Q |
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|||||| |||| |||| ||||||||||||||||||| || |||||||||||||| |||| | |||||| |||||||||||||||||||||||| |||||| |
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| T |
2406429 |
agtttataagcatttaactacacttttagcattataacagcttggaaatatcttctggtacatctgattggttaatatttatcttttcatacacttctta |
2406330 |
T |
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| Q |
100 |
agagtacagtactaaactacttatcttttcaacttgttcaatgttgtctaaagtgctggaggtaaatagaaggtactatgctaattatggttgtt |
194 |
Q |
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| T |
2406329 |
-gagttcagtactaaa--acttatcttttcaacttgttcaatgttgtcttaagtgctggaagtaaatagaaggtactatgctaattattgttgtt |
2406238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 30596950 - 30596896
Alignment:
| Q |
140 |
atgttgtctaaagtgctggaggtaaatagaaggtactatgctaattatggttgtt |
194 |
Q |
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| T |
30596950 |
atgttgtctgaggtgctgaaagtaaatagaaggtactatgctaattattgttgtt |
30596896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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