View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15744_low_8 (Length: 383)
Name: NF15744_low_8
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15744_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 15588979 - 15588795
Alignment:
| Q |
182 |
tagttttcatctctttttcaaatcttcatctgtcacaaatattcatagatatgtgaccaaacttaatgaaagatagactgaaacaccatatcttccatta |
281 |
Q |
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| T |
15588979 |
tagttttcatctctttttcaaatcttcatctgtcacaaatattcatagatatgtgatcaaacttaatgaaagatagactgaaacaccatatcttccatta |
15588880 |
T |
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| Q |
282 |
ataataatataatgcatagataagtgatttcatgcatttaaaggaaatgatagaatataaaaagttatgaaaattcaatttgaaa |
366 |
Q |
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| T |
15588879 |
ataataatataatgcatagataagtgatttcatgcgtttaaaggaaatgatacaatataaaaagttatgaaaattcaatttgaaa |
15588795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 15589619 - 15589458
Alignment:
| Q |
19 |
aggccagatttcatatgttgaacatattcataattctcttagcgggctataatttcacgcagtgaaattgacaagatagaaaatactagccttttcttga |
118 |
Q |
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| T |
15589619 |
aggccagatttcatatgttgaacatattcataattctcttagcgggctataatttcacgtagtgaaattgacaagatggaaaatactagccttttcttga |
15589520 |
T |
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| Q |
119 |
tcagcaagtaacctctatttggggacctttcgaaactcaaatgaaaaactttccaacacaaa |
180 |
Q |
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| T |
15589519 |
tcagcaagtaacctctatttggggacctttcgaaactcaaatgaaaaactttccaacacaaa |
15589458 |
T |
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