View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15744_low_9 (Length: 381)
Name: NF15744_low_9
Description: NF15744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15744_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 7171522 - 7171762
Alignment:
| Q |
15 |
cacagacatgtgaatatgaacttttcaaatacactataaaatatgtcccaaagatataat---------agtgtatttgtgtttgcaatccaatgttaga |
105 |
Q |
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| T |
7171522 |
cacaaacatgtgaatatgaacttttcaaatacactataaaatatgtcccaaagatataatggaggcttgagcgtatttgtgtttgcaatctaatgttagt |
7171621 |
T |
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| Q |
106 |
gaatatatttggatatttttcaaaacaatttgatcttttctacttctgatc-tttttcagatgcagaaattcttgacataa--nnnnnnnnngagagatt |
202 |
Q |
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| T |
7171622 |
gaatatatttggatatttttcaaaacaatttgatcttttctacttctgatcttttttcagatgcagaaattcttgacataattttttttttggagagatt |
7171721 |
T |
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| Q |
203 |
gtgttgttgggagatgtgttctaatttgaatgatacttccc |
243 |
Q |
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| T |
7171722 |
gtgttgttgggagatgtgttctaatttgaatgatacttccc |
7171762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 7170112 - 7170337
Alignment:
| Q |
15 |
cacagacatgtgaatatgaacttttcaaatacactataaaatatgtcccaaagatataat---------agtgtatttgtgtttgcaatccaatgttaga |
105 |
Q |
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|||| |||||| |||||||||||||||||||||||||| || |||| ||| ||||||||| |||||||||||| |||||||| |||||| || |
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| T |
7170112 |
cacacacatgtaaatatgaacttttcaaatacactatagaagatgttccagagatataatggaggcttgagtgtatttgtgcttgcaatctaatgtttga |
7170211 |
T |
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| Q |
106 |
gaatatatttggatatttttcaaaacaatttgatcttttctacttctgatctttttcagatgcagaaattcttgacataa---nnnnnnnnngagagatt |
202 |
Q |
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| T |
7170212 |
gaatatatttggatcttttttaaa-caatctgatcttttctacttttgatctttttgagatacataaattcttgacataaaagattttttttgagagatt |
7170310 |
T |
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| Q |
203 |
gtgttgttgggagatgtgttctaattt |
229 |
Q |
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| T |
7170311 |
gtgttattgggagatgtgttctaattt |
7170337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 26645789 - 26645739
Alignment:
| Q |
24 |
gtgaatatgaacttttcaaatacactataaaatatgtcccaaagatataat |
74 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||| |||| |
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| T |
26645789 |
gtgaatatgaacttttcaaatacactataaaagatgttccaaagatgtaat |
26645739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 10916705 - 10916667
Alignment:
| Q |
36 |
ttttcaaatacactataaaatatgtcccaaagatataat |
74 |
Q |
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| T |
10916705 |
ttttcaaatacactataaaagatgttccaaagatataat |
10916667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 11434141 - 11434086
Alignment:
| Q |
15 |
cacagacatgtgaatatgaacttttcaaatacactataaaatatgtcccaaagata |
70 |
Q |
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|||| ||| |||||| |||||||||||||||||||||||||||| | ||||||||| |
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| T |
11434141 |
cacacacaagtgaatttgaacttttcaaatacactataaaatatattccaaagata |
11434086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 15963415 - 15963476
Alignment:
| Q |
104 |
gagaatatatttggatatttttcaaaacaatttgatcttttctacttctgatctttttcagat |
166 |
Q |
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| T |
15963415 |
gagaagatgtttggatatttttcaag-caatctgatcttttctgcttctgatctttttcagat |
15963476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 27223279 - 27223231
Alignment:
| Q |
24 |
gtgaatatgaacttttcaaatacactataaaatatgtcccaaagatata |
72 |
Q |
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|||||| ||||||||||||||||| | |||||||||| |||||||||| |
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| T |
27223279 |
gtgaatttgaacttttcaaatacattgtaaaatatgtgtcaaagatata |
27223231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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