View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_101 (Length: 237)
Name: NF15745_high_101
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_101 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 43895592 - 43895793
Alignment:
| Q |
18 |
agagatcatatcaggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatgttgagactcacaccagaattgccaccaacatca |
117 |
Q |
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| T |
43895592 |
agagatcatatcaggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatgttgagactcacaccagaattgccaccaacatca |
43895691 |
T |
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| Q |
118 |
actagagtctccacacctttgaagccatcataattctccaacatttctctcatgtagggcaatgacatcccagacatggaagcataaaacaaactcattt |
217 |
Q |
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| T |
43895692 |
actagagtctccacacctttgaagccatcataattctccaacatttccctcatgtagggcaatgacatcccagacatggaagcataaaacaaactcattt |
43895791 |
T |
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| Q |
218 |
ct |
219 |
Q |
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|| |
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| T |
43895792 |
ct |
43895793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 43907100 - 43907296
Alignment:
| Q |
22 |
atcatatcaggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatgttgagactcacaccagaattgccaccaacatcaacta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| |
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| T |
43907100 |
atcatatcaggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatattgagaatcacaccagaatttccaccaacatcaacta |
43907199 |
T |
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| Q |
122 |
gagtctccacacctttgaagccatcataattctccaacatttctctcatgtagggcaatgacatcccagacatggaagcataaaacaaactcatttc |
218 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||||| ||||||||||||||||| |
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| T |
43907200 |
gagattccacacctttgaagccatcatacttctccaacatttcattcatgtggggcattgacattccagacatggaagcgtaaaacaaactcatttc |
43907296 |
T |
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