View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_113 (Length: 217)
Name: NF15745_high_113
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_113 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 31830298 - 31830481
Alignment:
| Q |
18 |
cagatgtaatggagattctcagaaagacaaggtttccccgggttaacggcattggcgatgagagctcacctcagactattctggaccatgagtaagcctt |
117 |
Q |
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| T |
31830298 |
cagatgtaatggagattctcagaaagacaaggtttccccgggttaacggcattggcgatgagagctcacctcagactattctggaccatgagtaagcctt |
31830397 |
T |
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| Q |
118 |
tcatctcttccttcaatcttttccattcctatgatgctcggagattgcaaggctgataaaattcttggtttaattggtatagtc |
201 |
Q |
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| T |
31830398 |
tcatctcttccttcaatcttttccattcctatgatgctcggagattgcaaggctaataaaattcttggtttaattggtatagtc |
31830481 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 38122261 - 38122225
Alignment:
| Q |
18 |
cagatgtaatggagattctcagaaagacaaggtttcc |
54 |
Q |
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| T |
38122261 |
cagatgtaatggagattctcagaaagacaaggtttcc |
38122225 |
T |
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