View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15745_high_15 (Length: 506)

Name: NF15745_high_15
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15745_high_15
NF15745_high_15
[»] chr5 (5 HSPs)
chr5 (13-488)||(12216720-12217195)
chr5 (242-324)||(20370115-20370196)
chr5 (402-486)||(6364501-6364590)
chr5 (242-324)||(19759924-19760006)
chr5 (242-320)||(27679497-27679575)
[»] chr2 (10 HSPs)
chr2 (270-324)||(30243245-30243299)
chr2 (242-324)||(22522996-22523078)
chr2 (269-319)||(30045453-30045503)
chr2 (269-319)||(30050616-30050666)
chr2 (269-319)||(30141660-30141710)
chr2 (273-324)||(30089044-30089095)
chr2 (273-324)||(30125648-30125699)
chr2 (275-327)||(18688929-18688981)
chr2 (242-322)||(20565059-20565139)
chr2 (257-321)||(31476969-31477033)
[»] chr7 (4 HSPs)
chr7 (269-325)||(3265494-3265550)
chr7 (270-324)||(5584642-5584696)
chr7 (270-324)||(5589602-5589656)
chr7 (275-311)||(7838499-7838535)
[»] chr8 (7 HSPs)
chr8 (273-324)||(9014692-9014743)
chr8 (265-318)||(26695312-26695365)
chr8 (242-322)||(12938911-12938991)
chr8 (272-324)||(7380039-7380091)
chr8 (276-324)||(35061631-35061679)
chr8 (273-309)||(40512645-40512681)
chr8 (265-293)||(42982911-42982939)
[»] chr6 (6 HSPs)
chr6 (255-324)||(8217378-8217447)
chr6 (276-322)||(20013163-20013209)
chr6 (242-324)||(23629821-23629903)
chr6 (242-311)||(8575561-8575629)
chr6 (269-321)||(4826288-4826340)
chr6 (271-323)||(14552333-14552385)
[»] chr4 (7 HSPs)
chr4 (275-324)||(10082397-10082446)
chr4 (273-324)||(3527385-3527436)
chr4 (242-309)||(25783161-25783228)
chr4 (242-304)||(13304126-13304188)
chr4 (242-303)||(33758788-33758849)
chr4 (272-309)||(44857200-44857237)
chr4 (271-311)||(43027300-43027340)
[»] chr3 (3 HSPs)
chr3 (242-306)||(38379042-38379106)
chr3 (261-311)||(2662100-2662150)
chr3 (272-304)||(41113191-41113223)
[»] chr1 (6 HSPs)
chr1 (257-309)||(30433507-30433559)
chr1 (242-324)||(8269352-8269434)
chr1 (242-324)||(31979419-31979501)
chr1 (260-321)||(44287143-44287204)
chr1 (280-324)||(17201228-17201272)
chr1 (278-318)||(52202317-52202357)


Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 13 - 488
Target Start/End: Original strand, 12216720 - 12217195
Alignment:
Q  13 agcataggacaaaaactggttgctatgaatctatgatgtgtgggacgaaaataactttgacagctacaataatatgagcaaggcaaagcacgtgtggcag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12216720 agcataggacaaaaactggttgctatgaatctatgatgtgtgggacgaaaataactttgacagctacaataatatgagcaaggcaaagcacgtgtggcag 12216819  T
Q  113 caagatcagtgaggaaatataggcacacaaggtaacaactcatcagctagctagatcactgtgaaaaataagagaatcagaatattctacctacaattca 212  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12216820 taagatcagtgaggaaatataggcacacaaggtaacaactcatcagctagctagatcactgtgaaaaataagagaatcagaatattctacctacgattca 12216919  T
Q  213 ttttcgagttttcaaatttcagacttctgttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||||||||||||||| |||||||||| |||||||    
T  12216920 ttttcgagttttcaaatttcagacttctgttttttgtggtgatcgggatttaaaattcaaaccttatatatattatgtattgtctctaccaactgagctg 12217019  T
Q  313 agttcacgaggatcagcttctgccatatatatacaagaggaaattatttatgaataaccaaattgtacaatcgacaacatatttacaattttttaaccga 412  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12217020 agttcacgaagatcaacttctgccatatatatacaagaggaaattatttatgaataaccaaattgtacaatcgacaacatatttacaattttttaaccga 12217119  T
Q  413 tttcgagttgcatgcactcataatgctatatggtgttggaagggttgtctggattttggttgtatatacaacacat 488  Q
    |||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12217120 tttcgaattgcatgcactaagaatgttatatggtgttggaagggttgtctggattttggttgtatatacaacacat 12217195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 20370115 - 20370196
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    ||||||||||||  |||||||| |||| | |||||||||||||||||| |||||| ||||||| |||||| || |||||||||    
T  20370115 ttttttgtggtgggtgggatttgaact-caaaccttgtatatattatgcattatccctaccaactgagctaagctcacgagga 20370196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 6364590 - 6364501
Alignment:
Q  402 tttttaaccgatttcgagttgcatgcactcataatgctatatggtg-----ttggaagggttgtctggattttggttgtatatacaacac 486  Q
    ||||||||||||||||| |||||||||| || |||| |||| | |      |||||| |||||||||||||||||||||||||| |||||    
T  6364590 tttttaaccgatttcgatttgcatgcacccacaatgttataggataggatattggaaaggttgtctggattttggttgtatatataacac 6364501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 19760006 - 19759924
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    |||||||||||| ||||| | | ||| ||| |||||| |||||||||| ||| |  |||||||||||||| || |||||||||    
T  19760006 ttttttgtggtggttggggtcttaacctcggaccttgcatatattatgcattgtacctaccaattgagctaagctcacgagga 19759924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 27679575 - 27679497
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacg 320  Q
    ||||||||||||   ||||||| |||  ||||||||| |||||||||| ||||||| |||||| |||||| || |||||    
T  27679575 ttttttgtggtgtccgggatttgaaccccgaaccttgcatatattatgcattatctttaccaactgagctaagctcacg 27679497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 30243299 - 30243245
Alignment:
Q  270 cgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    |||||||||||||||||||| ||| |||||||||| |||||| ||||||||||||    
T  30243299 cgaaccttgtatatattatgcattgtctctaccaactgagctaagttcacgagga 30243245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 22522996 - 22523078
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    ||||||||||||   ||||||| ||| |||||||||| |||||||||||||| ||  |||||| |||||| || |||||||||    
T  22522996 ttttttgtggtggccgggatttgaacctcgaaccttgcatatattatgtattgtccataccaactgagctaagctcacgagga 22523078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 30045503 - 30045453
Alignment:
Q  269 tcgaaccttgtatatattatgtattatctctaccaattgagctgagttcac 319  Q
    ||||||||||||||||||||| ||| || |||||||||||||| |||||||    
T  30045503 tcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcac 30045453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 30050666 - 30050616
Alignment:
Q  269 tcgaaccttgtatatattatgtattatctctaccaattgagctgagttcac 319  Q
    ||||||||||||||||||||| ||| || |||||||||||||| |||||||    
T  30050666 tcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcac 30050616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 30141710 - 30141660
Alignment:
Q  269 tcgaaccttgtatatattatgtattatctctaccaattgagctgagttcac 319  Q
    ||||||||||||||||||||| ||| || |||||||||||||| |||||||    
T  30141710 tcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcac 30141660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 30089095 - 30089044
Alignment:
Q  273 accttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    ||||||||||||||||| ||| || ||||||| |||||| ||||||||||||    
T  30089095 accttgtatatattatgcattgtccctaccaactgagctaagttcacgagga 30089044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 30125699 - 30125648
Alignment:
Q  273 accttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    ||||||||||||||||| ||| || ||||||| |||||| ||||||||||||    
T  30125699 accttgtatatattatgcattgtccctaccaactgagctaagttcacgagga 30125648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 18688929 - 18688981
Alignment:
Q  275 cttgtatatattatgtattatctctaccaattgagctgagttcacgaggatca 327  Q
    ||||||| ||||||||||| ||| ||||||||||| | |||||| ||||||||    
T  18688929 cttgtatgtattatgtattgtctttaccaattgagttaagttcatgaggatca 18688981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 20565059 - 20565139
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgag 322  Q
    |||||||||||| ||||| ||| |||  || |||||| |||||||||| ||| || ||||||| |||||| || |||||||    
T  20565059 ttttttgtggtggttggggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 20565139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 31477033 - 31476969
Alignment:
Q  257 gggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacga 321  Q
    ||||||| |||  |||||||||||||||||||| ||| || ||||||| |||||| | |||||||    
T  31477033 gggatttgaaccccgaaccttgtatatattatgcattctccctaccaactgagctaaattcacga 31476969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 3265494 - 3265550
Alignment:
Q  269 tcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgaggat 325  Q
    ||||||||||||||| |||||||||||  |||||||||||| | |||||||||||||    
T  3265494 tcgaaccttgtatattttatgtattatacctaccaattgagttaagttcacgaggat 3265550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 5584696 - 5584642
Alignment:
Q  270 cgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    ||||| ||| |||||||||||||||||| ||||||||||||| || |||||||||    
T  5584696 cgaactttgcatatattatgtattatctttaccaattgagctaagctcacgagga 5584642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 5589656 - 5589602
Alignment:
Q  270 cgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    ||||| ||| |||||||||||||||||| ||||||||||||| || |||||||||    
T  5589656 cgaactttgcatatattatgtattatctttaccaattgagctaagctcacgagga 5589602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 7838535 - 7838499
Alignment:
Q  275 cttgtatatattatgtattatctctaccaattgagct 311  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  7838535 cttgcatatattatgtattatctctaccaactgagct 7838499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 9014692 - 9014743
Alignment:
Q  273 accttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||||||||    
T  9014692 accttgcatatattatgtattgtcgctaccaattgagctaagttcacgagga 9014743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 26695312 - 26695365
Alignment:
Q  265 aacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttca 318  Q
    |||||||||||||| |||||||||||||||||  || |||||||||| ||||||    
T  26695312 aacttcgaaccttgcatatattatgtattatccttaacaattgagctaagttca 26695365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 12938911 - 12938991
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgag 322  Q
    |||||||||||| | ||| |||||| |||||||||||||||||||||| ||| || ||| || ||||| | |||| |||||    
T  12938911 ttttttgtggtggtcggggtttaaatttcgaaccttgtatatattatgcattgtccctatcagttgagttaagtttacgag 12938991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 7380091 - 7380039
Alignment:
Q  272 aaccttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    |||||||||||||||||||||| ||  || |||||||||| || |||||||||    
T  7380091 aaccttgtatatattatgtattgtccataacaattgagctaagctcacgagga 7380039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 35061679 - 35061631
Alignment:
Q  276 ttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||||    
T  35061679 ttgtatatattatgtattgtctctatcaattgaactaagctcacgagga 35061631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 40512645 - 40512681
Alignment:
Q  273 accttgtatatattatgtattatctctaccaattgag 309  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  40512645 accttgtatatattatgtattgtctctaccaactgag 40512681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 42982939 - 42982911
Alignment:
Q  265 aacttcgaaccttgtatatattatgtatt 293  Q
    |||||||||||||||||||||||||||||    
T  42982939 aacttcgaaccttgtatatattatgtatt 42982911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 8217447 - 8217378
Alignment:
Q  255 ttgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    ||||||||| ||| |||||||||| |||||||||||||| | |||||||  |||||| || |||||||||    
T  8217447 ttgggatttgaacctcgaaccttgcatatattatgtattgtgtctaccagctgagctaagctcacgagga 8217378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 322
Target Start/End: Original strand, 20013163 - 20013209
Alignment:
Q  276 ttgtatatattatgtattatctctaccaattgagctgagttcacgag 322  Q
    |||||||||||||| |||||  |||||||||||||| ||||||||||    
T  20013163 ttgtatatattatgcattattcctaccaattgagctaagttcacgag 20013209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 23629821 - 23629903
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    |||||| ||||| | ||| ||| ||||||  |||||| |||||||||| ||| ||  ||||||||||||| ||||||||||||    
T  23629821 ttttttatggtgttcggggtttgaacttcataccttgcatatattatgcattgtcattaccaattgagctaagttcacgagga 23629903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 8575561 - 8575629
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagct 311  Q
    ||||||| |||| ||||||||| |||| |||||| || |||||||||| ||| || ||||||||||||||    
T  8575561 ttttttgcggtggttgggattttaact-cgaaccatgcatatattatgcattgtccctaccaattgagct 8575629  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 4826340 - 4826288
Alignment:
Q  269 tcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacga 321  Q
    |||||||||  |||||||||| ||| |||||||||||||| || |||||||||    
T  4826340 tcgaaccttacatatattatgcattgtctctaccaattgaactaagttcacga 4826288  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 14552385 - 14552333
Alignment:
Q  271 gaaccttgtatatattatgtattatctctaccaattgagctgagttcacgagg 323  Q
    ||||||||||||||||||| |||||||||| ||| |||| | || ||||||||    
T  14552385 gaaccttgtatatattatgcattatctctatcaactgagttaagctcacgagg 14552333  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 10082446 - 10082397
Alignment:
Q  275 cttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    ||||||||||||||||||| || ||||||| |||||| ||||||||||||    
T  10082446 cttgtatatattatgtattgtccctaccaactgagctaagttcacgagga 10082397  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 3527436 - 3527385
Alignment:
Q  273 accttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    ||||||||||||||||||||| || |||| || |||||| ||||||||||||    
T  3527436 accttgtatatattatgtattgtccctactaactgagctaagttcacgagga 3527385  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 25783228 - 25783161
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgag 309  Q
    |||||||||||| | || |||| ||||||| |||||| ||||| ||||||||||| ||||||| ||||    
T  25783228 ttttttgtggtggtcggaatttgaacttcggaccttgcatatactatgtattatccctaccaactgag 25783161  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 13304188 - 13304126
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaa 304  Q
    |||||||||||| |||| ||| |||  || || |||||||||||||||||||||| |||||||    
T  13304188 ttttttgtggtgtttggaattcaaatatcaaatcttgtatatattatgtattatccctaccaa 13304126  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 33758788 - 33758849
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctacca 303  Q
    ||||| |||||| ||||||||||||| ||  |||||| |||||||||| |||||| ||||||    
T  33758788 tttttggtggtggttgggatttaaacctcagaccttgcatatattatgcattatccctacca 33758849  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 44857200 - 44857237
Alignment:
Q  272 aaccttgtatatattatgtattatctctaccaattgag 309  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  44857200 aaccttgcatatattatgtattatctataccaattgag 44857237  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 43027340 - 43027300
Alignment:
Q  271 gaaccttgtatatattatgtattatctctaccaattgagct 311  Q
    |||||||| |||||||||| |||||| ||||||||||||||    
T  43027340 gaaccttgcatatattatgcattatcactaccaattgagct 43027300  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 38379106 - 38379042
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaatt 306  Q
    |||||||||||| ||||| ||| |||| |||| |||  |||||||||||||| ||||||||||||    
T  38379106 ttttttgtggtggttggggtttgaactccgaatcttacatatattatgtattgtctctaccaatt 38379042  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 2662150 - 2662100
Alignment:
Q  261 tttaaacttcgaaccttgtatatattatgtattatctctaccaattgagct 311  Q
    |||||||||||||||||| |||||||||| ||| ||| |||||| ||||||    
T  2662150 tttaaacttcgaaccttgcatatattatgcattgtctttaccaactgagct 2662100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 41113223 - 41113191
Alignment:
Q  272 aaccttgtatatattatgtattatctctaccaa 304  Q
    |||||| ||||||||||||||||||||||||||    
T  41113223 aaccttatatatattatgtattatctctaccaa 41113191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 30433507 - 30433559
Alignment:
Q  257 gggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgag 309  Q
    ||||||||||| || || |||||||||||||||||||||||||| ||| ||||    
T  30433507 gggatttaaacctcaaatcttgtatatattatgtattatctctatcaactgag 30433559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 8269352 - 8269434
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    |||||||||||| | ||| ||| |||  || |||||| |||||||||||||| ||  |||||| |||||| ||||||||||||    
T  8269352 ttttttgtggtggtcggggtttgaaccccggaccttgcatatattatgtattgtccttaccaactgagctaagttcacgagga 8269434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 31979419 - 31979501
Alignment:
Q  242 ttttttgtggtgattgggatttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    |||||||||||| ||||| ||| |||| | ||||||| ||||| ||| |||| |||||||||| | || | ||||||||||||    
T  31979419 ttttttgtggtggttggggtttgaactccaaaccttgcatataatatatattgtctctaccaactaagttaagttcacgagga 31979501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 44287143 - 44287204
Alignment:
Q  260 atttaaacttcgaaccttgtatatattatgtattatctctaccaattgagctgagttcacga 321  Q
    ||||||||| |||||||| ||||||||| |||||||   ||||||||||||| |||| ||||    
T  44287143 atttaaactccgaaccttatatatattacgtattattcataccaattgagctaagtttacga 44287204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 17201228 - 17201272
Alignment:
Q  280 atatattatgtattatctctaccaattgagctgagttcacgagga 324  Q
    |||||||||||||| || ||||||| |||||| ||||||||||||    
T  17201228 atatattatgtattgtccctaccaactgagctaagttcacgagga 17201272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 52202317 - 52202357
Alignment:
Q  278 gtatatattatgtattatctctaccaattgagctgagttca 318  Q
    |||||||||||| |||||||||||||| |||||| ||||||    
T  52202317 gtatatattatgcattatctctaccaactgagctaagttca 52202357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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