View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_18 (Length: 487)
Name: NF15745_high_18
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 192 - 472
Target Start/End: Complemental strand, 28478827 - 28478556
Alignment:
| Q |
192 |
gttttagttccaagtaacatattactattattattgtctaagtacactaattacaatggctgtttcaactagtttctatggtgttaaattggaacctttg |
291 |
Q |
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| T |
28478827 |
gttttagttccaagtaacatattactattatt---gtctaagtacactaattacaatggctgtttcaactagtttctatggtgctaaattggaacctttg |
28478731 |
T |
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| Q |
292 |
ttccttaaatgttgttcttcttcttcaacaacatcttcctcttatgttactagtactactcatttatcattttttggtagtaataaaaagagctttgttc |
391 |
Q |
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| T |
28478730 |
ttccttaaatgttgttcttcttcttcaacaacatcttcctcttatgtt------actactcatttatcattttttggtagtaataaaaagagctttgttc |
28478637 |
T |
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| Q |
392 |
aaagtagaggctcaattcgttgcgacgcttcatcttctgatgttttgattgatcctagtgataatgctaaatctgtttctg |
472 |
Q |
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| T |
28478636 |
aaagtagaggctcaattcgttgtgacgcttcatcttctgatgttttgattgatcctagtgataatgctaaatctgtttctg |
28478556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 28479018 - 28478884
Alignment:
| Q |
1 |
tgatagaattgaaggagtgtggataaaacgtgtactcaccaaccaatcagaacacaaagaaatcacacattatcaaataattccaaatactttccatacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
28479018 |
tgatagaattgaaggagtgtggataaaacgtgtactcaccaaccaatcagaacacaaagaaatcacacattctcaaataattccaaaaactttccatacg |
28478919 |
T |
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| Q |
101 |
ccacatcttttgccacatcatttcattattcattt |
135 |
Q |
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| T |
28478918 |
ccacatcttttgccacatcatttcattattcattt |
28478884 |
T |
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