View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_19 (Length: 486)
Name: NF15745_high_19
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 46 - 437
Target Start/End: Original strand, 5999721 - 6000094
Alignment:
| Q |
46 |
cataacggatacgaagacttttccttgcttttgtttcaattttcttatgaatggatgtttccaactcatgttcctgttcttcagttgaccttgtcttgaa |
145 |
Q |
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| T |
5999721 |
cataacggatacgaagacttttccttgcttttgtttcaattttcttatgaatggatgtttccaactcatgttcctgttcttgagttgaccttgtcttgaa |
5999820 |
T |
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| Q |
146 |
tgtgactcctcgttagtggttaccacnnnnnnnncgttgtcgtttgatgaattgatgtttttcactcatgttcctgttcttttctttatcttatcactta |
245 |
Q |
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| T |
5999821 |
tgtgactcctggttagtggttaccacaaaaaaaacgttgtcgtttgatgaattgatgttttccactcatgttcc-------------------tcactta |
5999901 |
T |
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| Q |
246 |
nnnnnnnacctctttaagtaggattgaaaattggttgggtcaggtcgaactcatgatttagttcataacttgattcgagtttgatacaaaagt-tatatt |
344 |
Q |
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| T |
5999902 |
tttttttacctctttaagtaggattgaaaattggttgggtcgggtcgaactcatggtttagttcataacttgattcgagtttgatacaaagttatatatt |
6000001 |
T |
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| Q |
345 |
ggtatattatagaaaatattcgagatgttcggatgttatattggtataggcaaaaacacaatatttcaattgtcctggtgattgtgttggttg |
437 |
Q |
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| T |
6000002 |
ggtatattatagaaaatattcgagatgtttggatgttatattggtataggcaaaaacacaatatttcaattgtcctagtgattgtgttggttg |
6000094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 472
Target Start/End: Original strand, 6000111 - 6000145
Alignment:
| Q |
438 |
ctcagttcaaataaagtttgtagtattgttaaatt |
472 |
Q |
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| T |
6000111 |
ctcagttcaaataaagtttgtagtattgttaaatt |
6000145 |
T |
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