View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_24 (Length: 471)
Name: NF15745_high_24
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Original strand, 44866206 - 44866649
Alignment:
| Q |
20 |
acaagatctttggccgctttgggacactaattgaatcaaagactaaacttctcgagaagactaaccgcgccaaagttgtttttgaacgatattgtgatgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44866206 |
acaagatctttggccgctttgggacactaattgaatcaaagactaaacttctcgagaagactaaccgcgccaaagttgtttttgaacgatattgtgatgc |
44866305 |
T |
|
| Q |
120 |
agaaactgcttttagcagtgctggaaagtatagcatatttggaccttcattacaaagttaccgcctcaagattttgcctcgtacaccagagaaaggcaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44866306 |
agaaactgcttttagcagtgctggaaagtatagcatatttggaccttcattacaaagttaccgcctcaagattttgcctcgtacaccagagaaaagcaca |
44866405 |
T |
|
| Q |
220 |
ggaaagcgaggtagnnnnnnnnnnnnnnnnnnnngttttgtggatgccgatgccgccacagtttgatgccttgacaattagtggtgagtttatgtgaaca |
319 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44866406 |
ggaaagcgaggtagaaaaagcaaaaaagaaaaaagttctgtggatgccgatgccgccacagtttgatgccttgacaattagtggtgagtttatgtgaaca |
44866505 |
T |
|
| Q |
320 |
tcgaccgacagtcttagttttagtattttgatgagctgttgatttggcgagcaagctaatacataaaatggagtagctcactaattgacgatgtatatag |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44866506 |
tcgaccgacagtcttagttttagtattttgatgagctgttgatttggcgagcaagctaatacataaaattgagtagctcactaattgacgatgtatatag |
44866605 |
T |
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| Q |
420 |
aaatctttttgggatagtatccattccatttaattatgatgatg |
463 |
Q |
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| T |
44866606 |
aaatctttttgggatagtatccattccatttaattatgatgatg |
44866649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 283 - 454
Target Start/End: Complemental strand, 45246993 - 45246821
Alignment:
| Q |
283 |
tgatgccttgacaattagtggtgagtttatgtgaacat-cgaccgacagtcttagttttagtattttgatgagctgttgatttggcgagcaagctaatac |
381 |
Q |
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||||||||||||| ||||||||||||||||||||| || | | |||||||||||||||||||| ||||||||| | || |||| || |||| ||||||| |
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| T |
45246993 |
tgatgccttgacagttagtggtgagtttatgtgaatattcaatcgacagtcttagttttagtactttgatgagtttttaattttgctagcatcctaatac |
45246894 |
T |
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| Q |
382 |
ataaaatggagtagctcactaattgacgatgtatatagaaatctttttgggatagtatccattccatttaatt |
454 |
Q |
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||| ||||||||| || ||| |||| ||| |||||||||||||||| || |||||||| ||||||||||||| |
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| T |
45246893 |
atagaatggagtaacttacttgttgatgatatatatagaaatcttttgggaatagtatcaattccatttaatt |
45246821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 28752547 - 28752337
Alignment:
| Q |
20 |
acaagatctttggccgctttgggacactaattgaatcaaagactaaacttctcgagaagactaaccgcgccaaagttgtttttgaacgatattgtgatgc |
119 |
Q |
| |
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||||||||||||||||||||||| | ||| |||||||||||||| | ||||| |||| ||||||||| || | ||||||||| || || |||||||| |
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| T |
28752547 |
acaagatctttggccgctttgggccgctagttgaatcaaagactgagcttctagagaggactaaccgtgctagagttgttttcaaaagacgctgtgatgc |
28752448 |
T |
|
| Q |
120 |
agaaactgcttttagcagtgctggaaagtatagcatatttggaccttcattacaaagttaccgcctcaagattttgcctcgtacaccagagaaaggcaca |
219 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| ||||||| ||| |
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| T |
28752447 |
agaaactgcttttagtagtgctggaaagtatagcatatttggaccttcactacaaagttaccgcctcaggattttgccccgtacaccaaagaaaggaaca |
28752348 |
T |
|
| Q |
220 |
ggaaagcgagg |
230 |
Q |
| |
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||||||||||| |
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| T |
28752347 |
ggaaagcgagg |
28752337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 268 - 463
Target Start/End: Complemental strand, 28752305 - 28752109
Alignment:
| Q |
268 |
gatgccgccacagtttgatgccttgacaattagtggtgagttt-atgtgaacatcgaccgacagtcttagttttagtattttgatgagctgttgatttgg |
366 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||| |||||||||||||||||||||||| | | | |||| |
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| T |
28752305 |
gatgcccccacagtttgatgccttgacaattagtggtaagttttatgtgaatatcgatcgacactcttagttttagtattttgatgagttactaacttgg |
28752206 |
T |
|
| Q |
367 |
cgagcaagctaatacataaaatggagtagctcactaattgacgatgtatatagaaatctttttgggatagtatccattccatttaattatgatgatg |
463 |
Q |
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| |||| |||||| ||| ||| |||||||||||||||||| ||| |||||||||||||||| ||||||||| | ||||||||||| |||| ||||| |
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| T |
28752205 |
ctagcatgctaatcaatagaattgagtagctcactaattgatgatttatatagaaatcttttggggatagtaccaattccatttaaatatgttgatg |
28752109 |
T |
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