View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_27 (Length: 461)
Name: NF15745_high_27
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 37046007 - 37045566
Alignment:
| Q |
1 |
catttaaaaagttttcgcaaaagttgtctaaatttgattgcaaaaaaccatttctcttgctaattagtttctcaagtcttgtgctgannnnnnnnnnnnn |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37046007 |
catttaaaaagttttcgcaaaagttgtctaaatttgattgcaaaaaaccatttctcttgctaattagtttctcaagtcttgtgctgattttttgttattt |
37045908 |
T |
|
| Q |
101 |
nnnatcctaatagagtgcatgagcttccacgtgtggatttatttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgtttt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37045907 |
tttatcctaatagagtgcatgagcttccacgtgtggatttgtttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgtttt |
37045808 |
T |
|
| Q |
201 |
gtctctattggcacttgattatccagctaataagctagcttgttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37045807 |
gtctctattggcacttgattatccagctaataagctagcttgttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttct |
37045708 |
T |
|
| Q |
301 |
aaatttgctaagttttgggttcctttctgtaagaagtataatgtacaagttagagcaccttttagatatttctctcaagttaccaatagtga---tgatt |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37045707 |
aaatttgctaagttttgggttcctttctgtaagaagtataatgtacaagttagagcaccttttagatatttctctcaagttaccaatagtgatgatgatt |
37045608 |
T |
|
| Q |
398 |
cagctgaattcaaacaagaatggttaaaaatgaaggtaagta |
439 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
37045607 |
cagctgaattcaaacaagaatggttaaaaatgaaggtaagta |
37045566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 119 - 446
Target Start/End: Complemental strand, 37036549 - 37036219
Alignment:
| Q |
119 |
atgagcttccacgtgtggatttatttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttga |
218 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
37036549 |
atgagcttccatgtgtggatttgtttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggctcttga |
37036450 |
T |
|
| Q |
219 |
ttatccagctaataagctagcttgttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgctaagttttgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37036449 |
ttatccagctaataagctagcttgttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgccaagttttgg |
37036350 |
T |
|
| Q |
319 |
gttcctttctgtaagaagtataatgtacaagttagagcaccttttagatatttctctcaagttaccaatagtga---tgattcagctgaattcaaacaag |
415 |
Q |
| |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37036349 |
gtacctttctgtaagaagtataatatacaagttagagcaccttttagatatttctctcaagttaccaatagtgatgatgattcagctgaattcaaacaag |
37036250 |
T |
|
| Q |
416 |
aatggttaaaaatgaaggtaagtagtataat |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
37036249 |
aatggttaaaaatgaaggtaagtagtataat |
37036219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 142 - 373
Target Start/End: Complemental strand, 37011836 - 37011605
Alignment:
| Q |
142 |
tttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttgattatccagctaataagctagctt |
241 |
Q |
| |
|
||||| |||||||||||||| || || ||||||||||| |||||| |||| || || || || | ||||||||||||||||| |||||||||||||||| |
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| T |
37011836 |
tttgtaacaacagcagatccagtgctagaaccaccaataatcacagtgaatacagtgttatcattgttggcacttgattatcctgctaataagctagctt |
37011737 |
T |
|
| Q |
242 |
gttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgctaagttttgggttcctttctgtaagaagtataa |
341 |
Q |
| |
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||||||||||||||||||| ||||| | |||||||||||| |||| |||||||| | ||||||||| | ||||||| || || ||||||||||| || |
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| T |
37011736 |
gttatgtttctgatgatgggtgttcaactcttaccttctatgctcttgtggaagctgccaaatttgctgaaatttgggtaccattttgtaagaagtacaa |
37011637 |
T |
|
| Q |
342 |
tgtacaagttagagcaccttttagatatttct |
373 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| |
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| T |
37011636 |
tgtacaatgtagagcaccatttagatatttct |
37011605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 142 - 365
Target Start/End: Complemental strand, 37027926 - 37027703
Alignment:
| Q |
142 |
tttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttgattatccagctaataagctagctt |
241 |
Q |
| |
|
||||||||||| |||||||| | || ||||||||||| |||||| |||| || || ||||| | |||||||||||||||||||| || |||||||| | |
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|
| T |
37027926 |
tttgtgacaacggcagatccagggctagaaccaccaataatcacagtgaatacagtgttgtcattgttggcacttgattatccagcaaacaagctagcat |
37027827 |
T |
|
| Q |
242 |
gttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgctaagttttgggttcctttctgtaagaagtataa |
341 |
Q |
| |
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| ||||||||||||||||| ||||| | ||||||| |||| ||| ||||||| ||||||||||||||| ||||||| ||||| |||||||| || || |
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| T |
37027826 |
gctatgtttctgatgatggatgttcacctcttaccttttatgcccttgtggaagcctctaaatttgctaagctttgggtacctttttgtaagaaatacaa |
37027727 |
T |
|
| Q |
342 |
tgtacaagttagagcaccttttag |
365 |
Q |
| |
|
||| |||||||||||||||||||| |
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|
| T |
37027726 |
tgtgcaagttagagcaccttttag |
37027703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 133 - 371
Target Start/End: Original strand, 17656146 - 17656384
Alignment:
| Q |
133 |
gtggatttatttgtgacaacagcagatcctgtacttgaaccaccaatcatcacattgaacactgttttgtctctattggcacttgattatccagctaata |
232 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||| ||||||||||| | ||||||||||| || ||||| ||||||||||| ||| || | | |
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| T |
17656146 |
gtggatttatttgtgacaacagcagacgatgagttagaaccagcaatcatcacaataaacactgttttatcactattagcacttgattacccatctcaca |
17656245 |
T |
|
| Q |
233 |
agctagcttgttatgtttctgatgatggctgttctgtttttaccttctatggtcttttggaagcttctaaatttgctaagttttgggttcctttctgtaa |
332 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| | | | |||||||| |||| ||||||| |||||||| || |||||| || || ||||| |
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|
| T |
17656246 |
agctagcttgttacgtttctgatgatggttgttctcctctaatcttctatgctcttcacaaagcttcaaaatttgcaaaacattgggtaccattttgtaa |
17656345 |
T |
|
| Q |
333 |
gaagtataatgtacaagttagagcaccttttagatattt |
371 |
Q |
| |
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||||| ||||||||| |||| || |||||||||||||| |
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|
| T |
17656346 |
aaagtacaatgtacaaattagggctccttttagatattt |
17656384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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