View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_32 (Length: 434)
Name: NF15745_high_32
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 211 - 416
Target Start/End: Complemental strand, 54151075 - 54150859
Alignment:
| Q |
211 |
atcaattttcgatcaatttgctttccagcatgatcctcagcaatctgaaagtagaaaataaaaatcataaacaagagtggaatgataaaatcacagatga |
310 |
Q |
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| T |
54151075 |
atcaattttcgatcaatttgctttccagcatgatcctcagcaatctgaaagtagaaaataaaaatcataaacaagagtggaatgataaaatcacagatga |
54150976 |
T |
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| Q |
311 |
atagtagaagaaaatcagagaatatcttaccatagctaatatagcattcattacttgagtat-----------tatacctagctaggacacatatataag |
399 |
Q |
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| T |
54150975 |
atagtagaagaaaattagagaatatcttaccatagctaatatatcattcattacttgagtattcacttccaaatatacctagctagaacacatatataag |
54150876 |
T |
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| Q |
400 |
ataatactgactataat |
416 |
Q |
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| T |
54150875 |
atcatactgactataat |
54150859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 54151323 - 54151122
Alignment:
| Q |
1 |
atgattcaagatttcattactcacagagtgaatatcaatccaaaatgaatcagttcaataaaatatagcagcaatcatttttgtttgaaaactagctgaa |
100 |
Q |
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| T |
54151323 |
atgattcaagatttcaatactcacagagtgaatatcaatccaaaatgaatcagttcaataaaatatagcagcaatcatttttgttt-----------gaa |
54151235 |
T |
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| Q |
101 |
atttacctttggagtgttatctgtgagggaaagactcgccatccactttgaagcctcttcattagagtatgagtataatgttacattctctttcaatcaa |
200 |
Q |
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| T |
54151234 |
atttacctttggagtgttatctgtgagggaaagactcgccatccactttgaagcctcttcatta------gagtataatgttacattctctttcaatcaa |
54151141 |
T |
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| Q |
201 |
cgtattttttatcaatttt |
219 |
Q |
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| T |
54151140 |
cgtattttggatcaatttt |
54151122 |
T |
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