View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15745_high_35 (Length: 418)
Name: NF15745_high_35
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_35 |
 | |
|
| [»] scaffold0194 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0194 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 9850 - 9461
Alignment:
| Q |
13 |
gaacacacctatatgagcaaagaataaatactaaatttagtcctaggcaaacctatttggtccttgagaaatggaaaatactgcaaagaagttacttgaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9850 |
gaacacacctatatgagcaaagaataaatactaaatttagtcctcggcaaacctatttggtccttgagaaatggaaaatactgcaaagaagttacttgaa |
9751 |
T |
|
| Q |
113 |
tacctaaactttgacaatgtatttgacaccttacaaaaaatacatcatttataactattgatttcactcaaggagagagnnnnnnnnnnnnnnnnnnnnn |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9750 |
tacctaaactttgacaatgtatttgacaccttacaaaaaatacatcatttataactattgatttcactcaaggagagagaaaaaaactaataaaaaacaa |
9651 |
T |
|
| Q |
213 |
nnttgtatttgtaccaagaacatttctcaaatacaaatttggtcattaagaattgtgaaatgggcaagaatcttattaccaaaagctagttggttcaaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9650 |
aattgtatttgtaccaagaacatttctcaaatacaaatttggtccttaagaattgtgaaatgggcaaaaatcttattaccaaaagctagttggttcaaag |
9551 |
T |
|
| Q |
313 |
gatgcaggtggtgaaagcacatatttacaatatgttattactagcatttctatagcgggcgatagcagaggcctgctgcaacgttaaatg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
9550 |
gatgcaggtggtgaaagcacatatttacaatatgttattactagcatttctatagccggcgatagcagaggtctgctgcaatgttaaatg |
9461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University