View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15745_high_36 (Length: 416)

Name: NF15745_high_36
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15745_high_36
NF15745_high_36
[»] chr3 (4 HSPs)
chr3 (126-399)||(51309664-51309936)
chr3 (14-131)||(51310015-51310132)
chr3 (355-397)||(3433053-3433095)
chr3 (358-399)||(31153319-31153360)
[»] chr4 (3 HSPs)
chr4 (358-399)||(6076608-6076649)
chr4 (355-399)||(30599904-30599948)
chr4 (362-399)||(37977510-37977547)
[»] chr2 (2 HSPs)
chr2 (354-397)||(5552276-5552319)
chr2 (355-399)||(44277839-44277883)
[»] chr5 (1 HSPs)
chr5 (356-397)||(15072057-15072098)
[»] chr1 (1 HSPs)
chr1 (355-399)||(35617087-35617131)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 126 - 399
Target Start/End: Complemental strand, 51309936 - 51309664
Alignment:
Q  126 atttagcagacactgcattattggattgttcataagtttatgttaatttgtatatagcaagtatgtttatgtaaacttgttttcaatttctagctctggt 225  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51309936 atttagcagacactgcattgttggattgttcataagtttatgttaatttgtatatagcaagtatgtttatgtaaacttgttttcaatgtctagctctggt 51309837  T
Q  226 cacaaaattatctctgattttgctgccaatttgtttttcttttggtgcaatttgtttgatagagttattcaagctctacaacgccaaattagggctttta 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51309836 cacaaaattatctctgattttgctgccaatttgtttttcttttggtgcaatttgtttgatagagttattcaagctctacaacgccaaattaggg-tttta 51309738  T
Q  326 agtgatggatacatcatacaagagccacactaagagcatccacgattgagaccctcaaattgaaggtcttaaac 399  Q
    ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51309737 agtgatggatacatcctacacgagccacactaagagcatccacaattgagaccctcaaattgaaggtcttaaac 51309664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 51310132 - 51310015
Alignment:
Q  14 atgaacaagataagtatgttaatctatctgcttatattagtgaggaagatatgttggcacaaccttatggggacatttgcactagttagcatagattaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51310132 atgaacaagataagtatgttaatctatctgcttatattagtgaggaagatatgttggcacaaccttatggggacatttgcactagttagcatagattgca 51310033  T
Q  114 aattcatctcttatttag 131  Q
    ||||||||||||||||||    
T  51310032 aattcatctcttatttag 51310015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 3433095 - 3433053
Alignment:
Q  355 ctaagagcatccacgattgagaccctcaaattgaaggtcttaa 397  Q
    |||||||||||||| || |||| ||||||||||||||||||||    
T  3433095 ctaagagcatccacaatggagatcctcaaattgaaggtcttaa 3433053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 399
Target Start/End: Original strand, 31153319 - 31153360
Alignment:
Q  358 agagcatccacgattgagaccctcaaattgaaggtcttaaac 399  Q
    ||||||||||| || ||||||||||| |||||||||||||||    
T  31153319 agagcatccacaatggagaccctcaatttgaaggtcttaaac 31153360  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 399
Target Start/End: Original strand, 6076608 - 6076649
Alignment:
Q  358 agagcatccacgattgagaccctcaaattgaaggtcttaaac 399  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  6076608 agagcatccacaatggagaccctcaaattgaaggtcttaaac 6076649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 30599948 - 30599904
Alignment:
Q  355 ctaagagcatccacgattgagaccctcaaattgaaggtcttaaac 399  Q
    |||||||||||||| || ||||||||||| |||||||||||||||    
T  30599948 ctaagagcatccacaatggagaccctcaatttgaaggtcttaaac 30599904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 37977510 - 37977547
Alignment:
Q  362 catccacgattgagaccctcaaattgaaggtcttaaac 399  Q
    ||||||| || |||||||||||||||||||||||||||    
T  37977510 catccacaatggagaccctcaaattgaaggtcttaaac 37977547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 5552276 - 5552319
Alignment:
Q  354 actaagagcatccacgattgagaccctcaaattgaaggtcttaa 397  Q
    ||||||||||||||| || |||||||||||||||||| ||||||    
T  5552276 actaagagcatccacaatggagaccctcaaattgaagatcttaa 5552319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 44277883 - 44277839
Alignment:
Q  355 ctaagagcatccacgattgagaccctcaaattgaaggtcttaaac 399  Q
    |||||||||||||| || |||| |||||| |||||||||||||||    
T  44277883 ctaagagcatccacaatggagatcctcaatttgaaggtcttaaac 44277839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 15072057 - 15072098
Alignment:
Q  356 taagagcatccacgattgagaccctcaaattgaaggtcttaa 397  Q
    ||||||||||||| || |||||||||||||| ||||||||||    
T  15072057 taagagcatccacaatggagaccctcaaattaaaggtcttaa 15072098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 35617131 - 35617087
Alignment:
Q  355 ctaagagcatccacgattgagaccctcaaattgaaggtcttaaac 399  Q
    |||||||||||||| || ||||| ||||| |||||||||||||||    
T  35617131 ctaagagcatccacaatggagacgctcaagttgaaggtcttaaac 35617087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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