View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_41 (Length: 391)
Name: NF15745_high_41
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 175 - 375
Target Start/End: Original strand, 16845005 - 16845205
Alignment:
| Q |
175 |
gtgacacagtgaatgcatatacaaattagattctatagcagcatcattatcaagaaaaagcatataaatttataaaatcaaatgattctttctctgcaaa |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16845005 |
gtgacacagtgaatgcatatacaaattagattctatagcagcatcattatcaagaaaaagcatataaatttatataatcaaatgattctttctctgcaaa |
16845104 |
T |
|
| Q |
275 |
aaacgcaacattgttcgtgtatatccagctgaacctatcttccacaccagtctgcagatccacttcataacgtttcgactttaaactttcattctgattc |
374 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||| |
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| T |
16845105 |
aaacgcaacattgtccgtgtatatccagctgaacctatcttccacaccagtctgcagatccgcgccataaagtttcgactttaaacgttcattctgattc |
16845204 |
T |
|
| Q |
375 |
a |
375 |
Q |
| |
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| |
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| T |
16845205 |
a |
16845205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 16844880 - 16845006
Alignment:
| Q |
23 |
cgtcctgccatgtactatcaataaccttgatgtctttgaagttgagattgcagatctataattaaaaaatgacttgtgttagattggaaagtgaaatagg |
122 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16844880 |
cgtcctgccatgtactatcaataaccttgatgtctttcaagttgagattgcagatctataattaaaaaatgacttgtgttagattggaaagtgaaatagg |
16844979 |
T |
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| Q |
123 |
aaaacacaactaaataaagtaagaagt |
149 |
Q |
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| T |
16844980 |
aaaacacaactaaataaagtaagaagt |
16845006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 16838835 - 16838922
Alignment:
| Q |
30 |
ccatgtactatcaataaccttgatgtctttgaagttgagattgcagatctataattaaaaaatgacttgtgttagattggaaagtgaa |
117 |
Q |
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| T |
16838835 |
ccatgtacgatcaataaccttgatatctttgaagttgagattgcagatctataattaaaaaatgacttgtgttagattggaaagtgaa |
16838922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 18328439 - 18328346
Alignment:
| Q |
40 |
tcaataaccttgatgtctttgaagttgagattgcagatctataattaaaaaatgacttgtgttagattggaaagtgaaataggaaaacacaact |
133 |
Q |
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|||||||| ||||| ||||||||||| |||||||| |||| |||| ||||| ||||||||||||||||||||||||| | | ||||||||||| |
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| T |
18328439 |
tcaataacgttgatatctttgaagttaggattgcagttctacaattcaaaaaggacttgtgttagattggaaagtgaagttgtaaaacacaact |
18328346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 157
Target Start/End: Complemental strand, 18324114 - 18323987
Alignment:
| Q |
29 |
gccatgtactatcaataaccttgatgtctttgaagttgagattgcagatctataattaaaaaatgacttgtgttagattggaaagtgaaataggaaaaca |
128 |
Q |
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||||||||| ||||||| ||||| ||||||||||| ||||| || |||| |||| ||||| ||||||||||||||||||||||||| | | |||||| |
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| T |
18324114 |
gccatgtaccgtcaataatgttgatatctttgaagttaggattgaagttctacaattcaaaaaagacttgtgttagattggaaagtgaagttgcaaaaca |
18324015 |
T |
|
| Q |
129 |
caactaaataaagtaagaagttgcataat |
157 |
Q |
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||||| ||| ||| |||||||||| |||| |
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| T |
18324014 |
caactgaat-aagcaagaagttgcttaat |
18323987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 22040884 - 22040779
Alignment:
| Q |
32 |
atgtactatcaataaccttgatgtctttgaagttgagattgcagatctataattaaaaaatgacttgtgttagattggaaagtgaaataggaaaacacaa |
131 |
Q |
| |
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|||||| |||||||| ||||| ||||| ||||| ||||||||||||| || | ||||| | || |||||||||||| |||||||||| ||||||||| |
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| T |
22040884 |
atgtaccatcaataatgttgatatctttaaagttaggattgcagatctacaactcaaaaagggctcttgttagattggagagtgaaatagtaaaacacaa |
22040785 |
T |
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| Q |
132 |
ctaaat |
137 |
Q |
| |
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||||| |
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| T |
22040784 |
ataaat |
22040779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 18323916 - 18323834
Alignment:
| Q |
165 |
tgtactacatgtgacacagtgaatgcatat-acaaattagattctatag---cagcatcattatcaagaaaaagcatataaat |
243 |
Q |
| |
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||||| |||||||||||| |||||| |||| | ||| |||||||||||| |||||||||||||||||| ||| |||||||| |
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| T |
18323916 |
tgtaccacatgtgacacaatgaatgtatatgaaaaactagattctatagtagcagcatcattatcaagaacaagaatataaat |
18323834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 3233520 - 3233639
Alignment:
| Q |
40 |
tcaataaccttgatgtctttgaagttgagattgcagatctataattaaaaaatgacttgtgttagattggaaagtgaaataggaaaacacaactaaat-- |
137 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||| | || ||||| |||||||||||||| | | ||||||||| ||||||||||||||| |
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| T |
3233520 |
tcaataacactgatgtctttgaagttgggattgcagatctgcagttcaaaaaggacttgtgttagatggaagagtgaaatatcaaaacacaactaaatca |
3233619 |
T |
|
| Q |
138 |
aaagtaagaagttgcataat |
157 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
3233620 |
aaagcaagaagttgcataat |
3233639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 3867112 - 3867025
Alignment:
| Q |
211 |
agcagcatcattatcaagaaaaagcatataaatttataaaatcaaatgattctttctctgcaaaaaa---cgcaacattgttcgtgtatatc |
299 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
3867112 |
agcagcatcattatcaagaaaaagcatataa----gtaaaatcaaatgattctttctctgcaaaaaaaatcgcaacattattcgtgtatatc |
3867025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 3866835 - 3866797
Alignment:
| Q |
298 |
tccagctgaacctatcttccacaccagtctgcagatcca |
336 |
Q |
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|||||| |||||||||||||||||| ||||||||||||| |
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| T |
3866835 |
tccagccgaacctatcttccacaccggtctgcagatcca |
3866797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 10204411 - 10204494
Alignment:
| Q |
76 |
atctataattaaaaaatgacttgtgttagattggaaagtgaaataggaaaacacaactaaat--aaagtaagaagttgcataat |
157 |
Q |
| |
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||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||| ||||| |||| ||||||||||||||| |
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| T |
10204411 |
atctacaattcaaaaatgacttgtgttagattggagagtgaaatagtaaaacacaaataaatcaaaagcaagaagttgcataat |
10204494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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