View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15745_high_46 (Length: 364)
Name: NF15745_high_46
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_46 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 327
Target Start/End: Complemental strand, 2273970 - 2273658
Alignment:
| Q |
15 |
aaaatgtcactctctctatttagtattttctacttattgcagaaaacacagttccttagtattctactcaaacaaagcaacattatatatggagaaacag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2273970 |
aaaatgtcactctctctatttagtattttctacttattgcagaaaacacagtcccttagtattctactcaaacaaagcaacattatatatggagaaacag |
2273871 |
T |
|
| Q |
115 |
aaactctcacaagaagaaaaggaaaataaattttcagtgtcgtcaaattacagtaacaatactgtgtgggattgtggaagtacactttatgattcctttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2273870 |
aaactctcacaagaagaaaaggaaaataaattttcagtgtcgtcaaattacagtaacaatactgtgtgggattgtggaagtacactttatgattcctttg |
2273771 |
T |
|
| Q |
215 |
aactcaactccttcaaaaaccaacttgactcagccatagctagttcaaacattttaaatagaacactttccatgtctcatttaccggagcgtcgagtcac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2273770 |
aactcaactccttcaaaaaccaacttgactcagccatagctagttcaaacattttaaatagaacactttccatgtctcatttaccggagcgtcaagtcac |
2273671 |
T |
|
| Q |
315 |
agtacttcagaaa |
327 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2273670 |
agtacttcagaaa |
2273658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University