View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_5 (Length: 643)
Name: NF15745_high_5
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 241 - 628
Target Start/End: Complemental strand, 25216625 - 25216257
Alignment:
| Q |
241 |
atcattactagtataaagaaaaaagataaaaggagaatgatatattattttttgaaaactcggtattcaacctaaggg-cgaataattcgaagggttcaa |
339 |
Q |
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| T |
25216625 |
atcattactagtataaagataaaagataaaaggagaatgctatattatttttcgaaaattcggtattcaacctaaaagtcgaataatctgaaggattcaa |
25216526 |
T |
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| Q |
340 |
tttcaatgtctacttgcaaaaaggaaaatgatattattgcccattctcttccacacattatcatattgttctatgccaccgagttcttatcactcacact |
439 |
Q |
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| T |
25216525 |
tctcaa----------------ggaaaatgatattattgcccattctcttccacacattatcatattgttctatccagccaagttcttatcact--cact |
25216444 |
T |
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| Q |
440 |
ctttaatggggttaggtccaataattaaaagtgaacccattttaaagtggccacttaaaagatctatgtttttggatgttcaatattagaaggtagaata |
539 |
Q |
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| T |
25216443 |
ctctaatggggttaggtccaataattaaaagtgaacccattttaaagtggccacttaaa--atttatgtttttagatgttcaatattagaaggtagaata |
25216346 |
T |
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| Q |
540 |
ataaaatgtcttaaaagcaattannnnnnnngataaaataaaatcagtgannnnnnnaagagaatttcttttgtgccttccacgtctct |
628 |
Q |
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| T |
25216345 |
ataaaatgtcttaaaagcgattatactttttgataatataaaatcagtgatttttttaagagaatttcttttgtgccttccaagtctct |
25216257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 25216871 - 25216661
Alignment:
| Q |
21 |
tgaaagaaaaccaatttctttgttggtaagtaaagtaactaagtagtaagtatattaaggaattttgatatatcccacatttttaatataaaaaatgttt |
120 |
Q |
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| T |
25216871 |
tgaaagaaaaccaacttctttgttggtaagtaaagtaactaggtagtaagtatattaaggagttttgatatatcccacattgttaatatcaaaaatgttt |
25216772 |
T |
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| Q |
121 |
taagggtccaattcatggtactaggggttgaaattcgtgttggataccacgattattgccataataatcaacactctacctgatcataaaattaagaaaa |
220 |
Q |
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| T |
25216771 |
taagggtcaaattcatggtactaggggttgaaattcgcgttg--------gattatggccataataatcaaca--ctacctgaccataaaattaagaaaa |
25216682 |
T |
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| Q |
221 |
atcaacttatcaaactctcta |
241 |
Q |
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| T |
25216681 |
atcaacttatcaaactctcta |
25216661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 25228634 - 25228594
Alignment:
| Q |
358 |
aaaaggaaaatgatattattgcccattctcttccacacatt |
398 |
Q |
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| T |
25228634 |
aaaaggagaatgatagtattgtccattctcttccacacatt |
25228594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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