View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_50 (Length: 346)
Name: NF15745_high_50
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 52953433 - 52953764
Alignment:
| Q |
12 |
atgaattacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgattttgaaaaggtgtgagcctttacctagaagaaggtgttttg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52953433 |
atgaattacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgatttcgaaaaggtgtgagcctttacctagaagaaggtgttttg |
52953532 |
T |
|
| Q |
112 |
ctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953533 |
ctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttg |
52953632 |
T |
|
| Q |
212 |
taagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatcaaaggtttgttaagtct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52953633 |
taagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggttaatggatatgagaatcaaaggtttgttaagtct |
52953732 |
T |
|
| Q |
312 |
agaagtaagaatgattttcttgttgatgatgt |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
52953733 |
agaagtaagaatgattttcttgttgatgatgt |
52953764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 31904093 - 31903762
Alignment:
| Q |
12 |
atgaattacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgattttgaaaaggtgtgagcctttacctagaagaaggtgttttg |
111 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
31904093 |
atgaattacaaagtatttggaaattgtcaagatgattggagttatgctcagaaattgattttgaaagggtgtgagcctttaccaagaagaaggtgttttg |
31903994 |
T |
|
| Q |
112 |
ctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903993 |
ctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttg |
31903894 |
T |
|
| Q |
212 |
taagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatcaaaggtttgttaagtct |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31903893 |
taagaattttgagtgtttgaatggtaagaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatcaaaggtttgttaagtct |
31903794 |
T |
|
| Q |
312 |
agaagtaagaatgattttcttgttgatgatgt |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
31903793 |
agaagtaagaatgattttcttgttgatgatgt |
31903762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 139 - 343
Target Start/End: Original strand, 31673573 - 31673777
Alignment:
| Q |
139 |
atcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
238 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31673573 |
atcttcatccttttccaacttcactttggaaacctgttagcaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31673672 |
T |
|
| Q |
239 |
gaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgat |
338 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31673673 |
gaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgct |
31673772 |
T |
|
| Q |
339 |
gatgt |
343 |
Q |
| |
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||||| |
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| T |
31673773 |
gatgt |
31673777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 139 - 298
Target Start/End: Complemental strand, 31922101 - 31921942
Alignment:
| Q |
139 |
atcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
238 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31922101 |
atcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31922002 |
T |
|
| Q |
239 |
gaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatcaaag |
298 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31922001 |
gaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatcaaag |
31921942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 343
Target Start/End: Original strand, 7760340 - 7760638
Alignment:
| Q |
42 |
gatgattggagttttgcacagaaattgattttgaaaaggtgtgagcctttacctagaagaaggtgttttgctaaatctgtttcttctaaggtaaattatc |
141 |
Q |
| |
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|||||||||||| | || |||||| |||| || ||| |||||||||||||||||||||||||||||||| | ||| ||||||| || | | | | |
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| T |
7760340 |
gatgattggagtgtagctcagaaactgatcttaaaagggtgtgagcctttacctagaagaaggtgtttttcaaaaactgtttc----aaaatcaggtttt |
7760435 |
T |
|
| Q |
142 |
ttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaa |
241 |
Q |
| |
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|| ||||||||| ||| |||||||||||| || |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || ||||| |
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| T |
7760436 |
tt--tccttttcctgtttctctttggaagcctcttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaa |
7760533 |
T |
|
| Q |
242 |
attgaatagaggttgcatgcattgctttgatttggtta---atgggtatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgat |
338 |
Q |
| |
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||||| ||||| ||| | |||| ||||||||||||| ||| |||||||||| || ||||| ||||| | |||||| ||||||||| | |||||| |
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| T |
7760534 |
attgagtagagattgtgttaattgttttgatttggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgat |
7760633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 343
Target Start/End: Original strand, 28959879 - 28960052
Alignment:
| Q |
173 |
tgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgat |
272 |
Q |
| |
|
|||| |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| ||||| ||| | |||| |||||| |
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| T |
28959879 |
tgttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgttaattgttttgat |
28959978 |
T |
|
| Q |
273 |
ttggtta---atgggtatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgatgatgt |
343 |
Q |
| |
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||||||| ||| |||||||||| || ||||| ||||| | |||||| ||||||||| | ||||||||||| |
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| T |
28959979 |
ttggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgatgatgt |
28960052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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