View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_51 (Length: 340)
Name: NF15745_high_51
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_51 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 65 - 324
Target Start/End: Complemental strand, 17998921 - 17998662
Alignment:
| Q |
65 |
aaaacatgtgagattttgtgaatccataaaacctattcttttcaatcaattgatcgaaaaatccgtccaacaaaaaagattgtttgaaaaataatattaa |
164 |
Q |
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| T |
17998921 |
aaaacatgtgagattttgtgaatccaaaaaacctattcttttcaatcaattgatcgaaaaatccgtcaaagaaaaaagattgtttgaaaaataatattaa |
17998822 |
T |
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| Q |
165 |
ttgatgtataatgaaatacctgggatgggtcaaaagcgttactaggatcacagttagaagggtatgtgccatctttgtaattaggccatagaccctgaat |
264 |
Q |
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| T |
17998821 |
ttgatgtataatgaaatacctgggatgggtcaaaagcgttattaggatcacagttagaagggtatgtgccatccttataattaggccacagaccatgaat |
17998722 |
T |
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| Q |
265 |
tccaaaatctgcagcaggttttccagttgttgggtagcaacaactcttttttgagtcaca |
324 |
Q |
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| T |
17998721 |
tccaaaatctgcagcaggttttccagttgttgggtagcaacaactcttttttgagtcaca |
17998662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 169 - 309
Target Start/End: Complemental strand, 18006249 - 18006109
Alignment:
| Q |
169 |
tgtataatgaaatacctgggatgggtcaaaagcgttactaggatcacagttagaagggtatgtgccatctttgtaattaggccatagaccctgaattcca |
268 |
Q |
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|||| |||||| |||||| ||||| | |||||||||||| |||||||||||||||||||| |||||||| || ||||||||||| ||||| ||||||||| |
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| T |
18006249 |
tgtaaaatgaagtacctgagatggcttaaaagcgttactgggatcacagttagaagggtaagtgccatccttataattaggccagagaccatgaattcca |
18006150 |
T |
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| Q |
269 |
aaatctgcagcaggttttccagttgttgggtagcaacaact |
309 |
Q |
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| T |
18006149 |
aaatctgcagcaggctttccagttgttgggtagcaacaact |
18006109 |
T |
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