View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15745_high_53 (Length: 333)
Name: NF15745_high_53
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_53 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 29269657 - 29269413
Alignment:
| Q |
17 |
atgatgaacaatgtcacacaatacaatgaacattatcaagtgacaataattcaaacaatcaaaggcatcaattgaacaaataagtgggtgctaaaaagtc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29269657 |
atgatgaacaatgtcacacaatacaatgaacattatcaagtgacaataattcaaacaatcaaaggcatcaattgaacaaataagtgggggctaaaaagtc |
29269558 |
T |
|
| Q |
117 |
ctaagaggttgtaaccaagaaaacataaagaccc----------cgtgatatcacgtataaaaatgaattaacatacatattcatatatttcaataatgt |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29269557 |
ctaagtggttgtaaccaagaaaacataaagacccggtgatagcttgtgatatcacgtataaaaatgaattaacatacatattaatatatttcaataatgt |
29269458 |
T |
|
| Q |
207 |
gaatacaagaattannnnnnnaaatatagaaaattctagacctgt |
251 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29269457 |
gaatacaagaattatttttttaaatatagaaaattctagacctgt |
29269413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 29269256 - 29269200
Alignment:
| Q |
263 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtgaagtgtc |
319 |
Q |
| |
|
|||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29269256 |
gtcaaatagtctagtagttagaacttacacattctaaatatgaagaagtgaagtgtc |
29269200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 31187488 - 31187544
Alignment:
| Q |
264 |
tcaaatagtttagtggttagagcttacacattctaaatatgaagaagtgaagtgtct |
320 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| || | ||||| ||||||| |
|
|
| T |
31187488 |
tcaaatagtttagtggttagagctcacacattttaaatgtggataagtggagtgtct |
31187544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 3039156 - 3039206
Alignment:
| Q |
263 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtga |
313 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
3039156 |
gtcaagtagtttagtggttgaagctcacacattttaaatatgaagaagtga |
3039206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 624603 - 624554
Alignment:
| Q |
263 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtg |
312 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||| || ||||||| |
|
|
| T |
624603 |
gtcaagtagtttagtggttagagctcacacattttaaatgtggagaagtg |
624554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 37868514 - 37868570
Alignment:
| Q |
263 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtgaagtgtc |
319 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||| | || |||||||| ||||| |
|
|
| T |
37868514 |
gtcaaatagtttagtggttagagctcacacaatttaattgtggagaagtgaggtgtc |
37868570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 42433039 - 42433096
Alignment:
| Q |
263 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtgaagtgtct |
320 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
42433039 |
gtcaagtagtttagtggttagagcttacacattttaaatatggagaaatgaagtgtct |
42433096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 37104193 - 37104144
Alignment:
| Q |
263 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtg |
312 |
Q |
| |
|
|||||||| | ||||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
37104193 |
gtcaaataatctagtggttaaagctcacacattttaaatatgaagaagtg |
37104144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 11954212 - 11954252
Alignment:
| Q |
274 |
tagtggttagagcttacacattctaaatatgaagaagtgaa |
314 |
Q |
| |
|
||||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
11954212 |
tagtggttaaagcttacacattataaatatggagaagtgaa |
11954252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University