View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15745_high_55 (Length: 327)

Name: NF15745_high_55
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15745_high_55
NF15745_high_55
[»] chr1 (1 HSPs)
chr1 (59-308)||(6257000-6257261)
[»] chr8 (3 HSPs)
chr8 (54-104)||(44254294-44254344)
chr8 (61-111)||(13654816-13654866)
chr8 (61-111)||(13713458-13713508)
[»] chr4 (1 HSPs)
chr4 (48-110)||(23226681-23226743)
[»] scaffold0118 (1 HSPs)
scaffold0118 (48-93)||(37304-37349)
[»] chr6 (1 HSPs)
chr6 (59-106)||(34675793-34675840)
[»] chr2 (2 HSPs)
chr2 (48-91)||(37065410-37065453)
chr2 (49-105)||(30737043-30737099)
[»] chr7 (1 HSPs)
chr7 (59-95)||(32962886-32962922)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 59 - 308
Target Start/End: Original strand, 6257000 - 6257261
Alignment:
Q  59 tagtggctaaaattcacattttttaaagtgaataaataggatgtccggtgtttaaattctaatccctgcatataat------------gctaaaagaaaa 146  Q
    ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||            ||||||||||||    
T  6257000 tagtggctagaattcacattttttaaagtggataaataggatatccggtgtttaaactctaatccctgcatataataatgcatgtcttgctaaaagaaaa 6257099  T
Q  147 tactaattggaatcatatgctattcagtttttgtggcttctttcagctaaaatcataaaatccggcaaagattgaagtaatgatgatatttcaagtgcag 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6257100 tactaattggaatcatatgctattcagtttttgtggcttctttcagctaaaatcataaaatccggcaaagattgaagtaatgatgatatttcaagtgcag 6257199  T
Q  247 acaaagaccaatactaaggtcaagatgaaggtgcaccatatacatactttacttattgaccc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6257200 acaaagaccaatactaaggtcaagatgaaggtgcaccatatacatactttacttattgaccc 6257261  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 44254294 - 44254344
Alignment:
Q  54 tagcatagtggctaaaattcacattttttaaagtgaataaataggatgtcc 104  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  44254294 tagcatagtggctaaaattcacatttttcaaggtgaataagtaggatgtcc 44254344  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 13654816 - 13654866
Alignment:
Q  61 gtggctaaaattcacattttttaaagtgaataaataggatgtccggtgttt 111  Q
    |||| |||||||||||||||||||||||||||| | || ||||||| ||||    
T  13654816 gtggttaaaattcacattttttaaagtgaataagtggggtgtccggagttt 13654866  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 13713458 - 13713508
Alignment:
Q  61 gtggctaaaattcacattttttaaagtgaataaataggatgtccggtgttt 111  Q
    |||| |||||||||||||||||||||||||||| | || ||||||| ||||    
T  13713458 gtggttaaaattcacattttttaaagtgaataagtggggtgtccggagttt 13713508  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 23226681 - 23226743
Alignment:
Q  48 gtcaaatagcatagtggctaaaattcacattttttaaagtgaataaataggatgtccggtgtt 110  Q
    ||||| ||| |||||||||| |||||||||||||||| |||||||| |  |||||||||||||    
T  23226681 gtcaagtagtatagtggctataattcacattttttaaggtgaataagtgagatgtccggtgtt 23226743  T

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Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 37304 - 37349
Alignment:
Q  48 gtcaaatagcatagtggctaaaattcacattttttaaagtgaataa 93  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||    
T  37304 gtcaaatagcctagtggctaaatttcacattttttaaggtgaataa 37349  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 34675793 - 34675840
Alignment:
Q  59 tagtggctaaaattcacattttttaaagtgaataaataggatgtccgg 106  Q
    ||||||||| ||||||||||||||||||||||||| | || |||||||    
T  34675793 tagtggctagaattcacattttttaaagtgaataactggggtgtccgg 34675840  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 37065410 - 37065453
Alignment:
Q  48 gtcaaatagcatagtggctaaaattcacattttttaaagtgaat 91  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||    
T  37065410 gtcaaatagcataatggttaaaattcacattttttaaggtgaat 37065453  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 30737099 - 30737043
Alignment:
Q  49 tcaaatagcatagtggctaaaattcacattttttaaagtgaataaataggatgtccg 105  Q
    |||| |||| ||||| ||| |||||||||||||||| |||||||| | |||||||||    
T  30737099 tcaagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 30737043  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 32962886 - 32962922
Alignment:
Q  59 tagtggctaaaattcacattttttaaagtgaataaat 95  Q
    ||||||||||||||||||||||| || ||||||||||    
T  32962886 tagtggctaaaattcacatttttcaaggtgaataaat 32962922  T

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