View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_6 (Length: 619)
Name: NF15745_high_6
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 129 - 601
Target Start/End: Original strand, 43864826 - 43865298
Alignment:
| Q |
129 |
gtcataatcttagaatatgttagcatggatttgtggcattcacacactacagcatgcatttgtatacaatctattcacaaagaaaagtgtgaccataata |
228 |
Q |
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| T |
43864826 |
gtcataatcttagaatatgttagcatggatttgtggcatttacacactacagcatgcatttgtatacaatctattcacaaagaaaagtgtgaccataata |
43864925 |
T |
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| Q |
229 |
attttaaacaaatttcataacgttacaaacatggtaattaaactgaaagttgtaactattgatcaattaatttcagtaacagttacaaacatagtaataa |
328 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43864926 |
attttaaacaaatttcataacgttacaaacatagtaattaaactgaaagttgtaactattgatcaattaatttcactaacagttacaaacatagtaataa |
43865025 |
T |
|
| Q |
329 |
aataaaaccttactagaatataaaggtcaggttttttcagaggaaacaattccagccatatttcaattgttctctaattaatgcattgtaactctcgtat |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43865026 |
aataaaaccttactagaatataaaggtcaggttttttcagaggaaacaattccagccatatttcaattgttctctaattaatgcattgtaactctcgtat |
43865125 |
T |
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| Q |
429 |
aataagaaacacaaattagtgttgacttgtaacacatatgttaccttcaatttctgttacacctaattctgtcatggttttcgacacaaatctcagagaa |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43865126 |
aataagaaacacaaattagtgttgacttgtaacacatatgttaccttcaatttctgttacacctaattctgtcatggttttcgacacaaatctcagagaa |
43865225 |
T |
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| Q |
529 |
aactatccctcacaatcacaatcaatgcatttgcaagaaaactacctgaaaccaaggcagaaagatgagctaa |
601 |
Q |
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| T |
43865226 |
aactatccctcacaatcacaatcaatgcatttgcaagaaaactacctgaaaccaaggcagaaagatgagctaa |
43865298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 43864752 - 43864836
Alignment:
| Q |
21 |
atagatagattacaacttcactatgtacaagtgacactaatttcattcatattcataacaaaaagaaataagctaattaagtcataatctt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43864752 |
atagatagattacaacttcactatgtacaagtgacactaatttc------attcataacaaaaagaaataagctaattaagtcataatctt |
43864836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 11704557 - 11704529
Alignment:
| Q |
1 |
ttttataatatagtaagtagatagataga |
29 |
Q |
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| T |
11704557 |
ttttataatatagtaagtagatagataga |
11704529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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