View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_64 (Length: 297)
Name: NF15745_high_64
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_64 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 45248423 - 45248156
Alignment:
| Q |
18 |
gagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtgtgattgaacaggcgtgtcagaatgtagggaaagt |
117 |
Q |
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| T |
45248423 |
gagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtgtgattgaacaggcgtgtcagaatgtagggaaagt |
45248324 |
T |
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| Q |
118 |
tgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacaagcacgagaacgatgttgctttggcaaattttagtgcagttgtggagaat |
217 |
Q |
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| T |
45248323 |
tgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacaagcacgagaacgatgttgctttggcaaattttagtgcagttgtggaggat |
45248224 |
T |
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| Q |
218 |
gacggtgttttaaaagctgctgatagttttgttgttactaaagatgattctgaagattctcgtgtctc |
285 |
Q |
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| T |
45248223 |
gacggtgttttaaaagctgctgatagttttgttgttactaaagatgattctgaagattctcgtgtctc |
45248156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 102 - 285
Target Start/End: Original strand, 44864220 - 44864403
Alignment:
| Q |
102 |
agaatgtagggaaagttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacaagcacgagaacgatgttgctttggcaaattttag |
201 |
Q |
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| T |
44864220 |
agaatgtggggaaagttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacgaacaagagaacggggctaaaaacgttgctttaag |
44864319 |
T |
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| Q |
202 |
tgcagttgtggagaatgacggtgttttaaaagctgctgatagttttgttgttactaaagatgattctgaagattctcgtgtctc |
285 |
Q |
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| T |
44864320 |
cacggttgtggaggatggcggtgttttaaaagctgctgatagttttgttgctactaaatatgatcctgaagattctcgtgtctc |
44864403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 44864078 - 44864137
Alignment:
| Q |
29 |
gggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtgtgatt |
88 |
Q |
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| T |
44864078 |
gggaaagtaggaaaattttcatgtgggttggtgaaaaatgaagaggagaaaagtgtgatt |
44864137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 287
Target Start/End: Complemental strand, 28754625 - 28754450
Alignment:
| Q |
112 |
gaaagttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacaagcacgag---aacgatgttgctttggcaaattttagtgcagtt |
208 |
Q |
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| T |
28754625 |
gaaagttgcattgagtaacgagcttcaaggagttaaagatgatgtgactgagggtgatcacaaggttaaaaaagttgctttgccgaatttaagcgcggct |
28754526 |
T |
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| Q |
209 |
gtggagaatgacggtgttttaaaagctgctgatagttttgttgttactaaagatgattctgaagattctcgtgtctctg |
287 |
Q |
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| T |
28754525 |
gtggaggatgaaggtgtgataaaagctgctgattgttttgtt---actaaagatgatcctgaagattctagtgtctctg |
28754450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 28754788 - 28754718
Alignment:
| Q |
18 |
gagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtgtgatt |
88 |
Q |
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| T |
28754788 |
gagggtgtgatgggaaaggaggaaaattttcatgtgggttggtgaagaatgatgatgagaaaagtgtgatt |
28754718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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