View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15745_high_7 (Length: 578)

Name: NF15745_high_7
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15745_high_7
NF15745_high_7
[»] chr5 (6 HSPs)
chr5 (18-302)||(4383600-4383884)
chr5 (310-563)||(4383938-4384191)
chr5 (203-290)||(4768899-4768984)
chr5 (18-81)||(4768777-4768841)
chr5 (411-510)||(36849605-36849704)
chr5 (157-205)||(4385434-4385482)
[»] chr2 (5 HSPs)
chr2 (405-529)||(16230914-16231041)
chr2 (395-552)||(34688665-34688825)
chr2 (395-552)||(34711077-34711237)
chr2 (469-558)||(35546696-35546785)
chr2 (455-509)||(35564747-35564801)
[»] chr3 (2 HSPs)
chr3 (405-504)||(46520169-46520268)
chr3 (414-510)||(49879597-49879693)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 4383600 - 4383884
Alignment:
Q  18 ctaatgacaaatgatggaaatacttctatcagctataaaacctaaattgttttgcaaatgattctgttttcatcattacatctgggcagtgacctgcggt 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4383600 ctaatgacaaatgatggaaattcttctatcagctataaaacctaaattgttttgcaaatgattctgttttcatcattacatctgggcagtgacctgcggt 4383699  T
Q  118 gtacgacttgtattcactgatagtcgatcaagcatagcaaagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgcaatggaattgtagt 217  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4383700 ttacgacttgtattcactgatagtcgatcaagcatagcaaagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgcaatggaattgtagt 4383799  T
Q  218 atttaaccacaacattataccctataacactaagaattgcatataatcgaaacactacaatgcagcttctctgctgtcaaagatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4383800 atttaaccacaacattataccctataacactaagaattgcatataatcgaaaaactacaatgcagcttctctgctgtcaaagatg 4383884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 310 - 563
Target Start/End: Original strand, 4383938 - 4384191
Alignment:
Q  310 actccgtaatctttggtatgactatgatagacaacagaaactcagtggcaatcaacagaatgaatgcctactctcaagatgaaacttattagtattgatg 409  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  4383938 actccgtaatgtttgctatgactatgatagacaacagaaactcagtggcaatcaacagaatgaatgcctactctcaagaaggaacttattagtattgatg 4384037  T
Q  410 atgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaac 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4384038 atgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaac 4384137  T
Q  510 agagtcttcaaatgccacagctaatgagataaacaacaatgtgtcggttaatat 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4384138 agagtcttcaaatgccacagctaatgagataaacaacaatgtgtcggttaatat 4384191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 4768899 - 4768984
Alignment:
Q  203 caatggaattgtagtatttaaccacaacattataccctataacactaagaattgcatataatcgaaacactacaatgcagcttctctg 290  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||  |||||||||| || |||||||||||||||||    
T  4768899 caatcgaattgtagtatttaaccacagcattgtaccctataacactaagaattgc--ataatcgaaaaacaacaatgcagcttctctg 4768984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 4768777 - 4768841
Alignment:
Q  18 ctaatgacaaatgatggaaatacttctatcagcta-taaaacctaaattgttttgcaaatgattc 81  Q
    |||||||||||||||||||||||||||||||| || |||||  ||||||||||||||||||||||    
T  4768777 ctaatgacaaatgatggaaatacttctatcaggtactaaaagataaattgttttgcaaatgattc 4768841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 411 - 510
Target Start/End: Complemental strand, 36849704 - 36849605
Alignment:
Q  411 tgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaaca 510  Q
    ||||| ||| |||| ||||||  ||||||| ||||||||| |||||| ||||||| |||||||| ||  ||||||||||| ||| |||||||||||||||    
T  36849704 tgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgctcaaaaggaagtcagtgagccaaaagctgaacaagagaagcaaaca 36849605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 4385434 - 4385482
Alignment:
Q  157 aagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgcaa 205  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  4385434 aagcgagcagagctaaaagtgcaacgagcacatgaaggtaatcttgcaa 4385482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 405 - 529
Target Start/End: Original strand, 16230914 - 16231041
Alignment:
Q  405 tgatgatgatgaagacgacatacaagatagaattgggttcaaccagaagg---ggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagag 501  Q
    ||||||||||||||  ||||||| ||  |||| ||||||||||||| |||   ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  16230914 tgatgatgatgaagttgacatacgaggcagaactgggttcaaccagcaggaggggataaatgctaaaaaggaattcgttgagccaaaagacgatcaagag 16231013  T
Q  502 aagcaaacagagtcttcaaatgccacag 529  Q
    |||||||  || || |||||| ||||||    
T  16231014 aagcaaatcgaatcctcaaataccacag 16231041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 395 - 552
Target Start/End: Original strand, 34688665 - 34688825
Alignment:
Q  395 ttattagtattgatgatgatgaagacgacatacaagatagaattgggttcaacca---gaaggggatagatgctaaaaaggaattcgttgagccaaaaga 491  Q
    |||||| ||||||||||||||||   ||||||| ||  |||| ||| ||||||||   | |||||||| |||||||| ||||| | ||||||||||||||    
T  34688665 ttattattattgatgatgatgaaattgacatacgaggcagaactggattcaaccaacaggaggggataaatgctaaacaggaacttgttgagccaaaaga 34688764  T
Q  492 tgatcaagagaagcaaacagagtcttcaaatgccacagctaatgagataaacaacaatgtg 552  Q
    |||||||||||||||||  ||||| |||||| |||||  || |||||| ||||| ||||||    
T  34688765 tgatcaagagaagcaaatcgagtcctcaaataccacaattagtgagatgaacaataatgtg 34688825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 395 - 552
Target Start/End: Original strand, 34711077 - 34711237
Alignment:
Q  395 ttattagtattgatgatgatgaagacgacatacaagatagaattgggttcaacca---gaaggggatagatgctaaaaaggaattcgttgagccaaaaga 491  Q
    |||||| ||||||||||||||||   ||||||| ||  |||| ||| ||||||||   | |||||||| |||||||| ||||| | ||||||||||||||    
T  34711077 ttattattattgatgatgatgaaattgacatacgaggcagaactggattcaaccaacaggaggggataaatgctaaacaggaacttgttgagccaaaaga 34711176  T
Q  492 tgatcaagagaagcaaacagagtcttcaaatgccacagctaatgagataaacaacaatgtg 552  Q
    |||||||||||||||||  ||||| |||||| |||||  || |||||| ||||| ||||||    
T  34711177 tgatcaagagaagcaaatcgagtcctcaaataccacaattagtgagatgaacaataatgtg 34711237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 469 - 558
Target Start/End: Complemental strand, 35546785 - 35546696
Alignment:
Q  469 aaggaattcgttgagccaaaagatgatcaagagaagcaaacagagtcttcaaatgccacagctaatgagataaacaacaatgtgtcggtt 558  Q
    |||||||| |||||||| |||||||||||||||||| |||  ||||| | |||| | |||  |||||||||||||||||||||| |||||    
T  35546785 aaggaatttgttgagcccaaagatgatcaagagaagaaaatcgagtccttaaatacgacaattaatgagataaacaacaatgtggcggtt 35546696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 509
Target Start/End: Complemental strand, 35564801 - 35564747
Alignment:
Q  455 ggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaac 509  Q
    ||||| ||||||| ||| |||| ||||||||||||||||||||||||||| ||||    
T  35564801 ggataaatgctaagaagcaatttgttgagccaaaagatgatcaagagaagaaaac 35564747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 504
Target Start/End: Original strand, 46520169 - 46520268
Alignment:
Q  405 tgatgatgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaag 504  Q
    ||||||||||||||| ||||||||||  |||||||| ||||||||  |||||| ||| |||||| || || |   ||| ||||||| |||||||||||||    
T  46520169 tgatgatgatgaagaggacatacaaggaagaattggattcaaccacgaggggacagacgctaaagagaaagtgagtgaaccaaaagttgatcaagagaag 46520268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 510
Target Start/End: Original strand, 49879597 - 49879693
Alignment:
Q  414 tgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaaca 510  Q
    |||||| ||||| ||||  |||| ||| |||| |||| | |||||| | | |||||| ||| || ||||| ||||||||||||||||||||||||||    
T  49879597 tgaagaggacattcaaggcagaactggattcatccaggatgggataaacgataaaaaagaaatcattgagtcaaaagatgatcaagagaagcaaaca 49879693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University