View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_82 (Length: 255)
Name: NF15745_high_82
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_82 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 48749567 - 48749802
Alignment:
| Q |
1 |
ttaagatgagataaatttgttataatctgactgaaattaataatttgttataatctttggtgttatgacttatgaatgattttgagcttgagaaaaaagg |
100 |
Q |
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| T |
48749567 |
ttaagatgagataaatttgttataatctga----aattaataatttcttataatctttggtgttatgacttatgaatgattttgagcttgagaaaaaagg |
48749662 |
T |
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| Q |
101 |
aagtaattatggttgatgagtagtagtgagaagcaagtaaacagaaaagtgtatgactgcgtaacgaaatttgtgtgcttaaaataaaaatgaaatatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48749663 |
aagtaattatggttgatgagtagtagtgagaagcaagtaaacagaacagtgtatgactgcgtaacgaaatttgtgtgcttaaaataaaaatgaa--atag |
48749760 |
T |
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| Q |
201 |
atgacgtaacc-gaataataaagacaaattataccgtctctg |
241 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48749761 |
atgacgtaaccggaataataaagacaaattataccgtctctg |
48749802 |
T |
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