View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15745_high_87 (Length: 250)
Name: NF15745_high_87
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_87 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 31322926 - 31322691
Alignment:
| Q |
15 |
tatactaatcaaagtagaaatagaccagttcttttataagcttcaaattcaaataattgtaaacggtttatactcttaagtagttatcgaagatatattt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31322926 |
tatactaatcaaagtagaaatagaccagttcttttataagctttatattcaaataattgtaaacggtttatactcttaagtagttatcgaagatatattt |
31322827 |
T |
|
| Q |
115 |
caacatataagttttttcattttgttattatgttactgatacaaagttttcaccgtcgtttaccagtgattaatcttcattggaaaatcggtgaggtaca |
214 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| || |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| | |
|
|
| T |
31322826 |
caacatataagttgtttcattttgttactatgttattggtacaaagttttcactgtcgtttaccagtaactaatcttcattggaaaatcggtgaggtata |
31322727 |
T |
|
| Q |
215 |
taaggtggattttctcctttcaatcgagttttctcc |
250 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||| |
|
|
| T |
31322726 |
taaggtgggttctcccctttcaatcgagttttctcc |
31322691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 42563705 - 42563765
Alignment:
| Q |
134 |
ttttgttattatgttactgatacaaagttttcaccgtcgtttaccagtgattaatcttcat |
194 |
Q |
| |
|
|||| ||| |||| || |||||||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
42563705 |
tttttttactatgatattgatacaaagtttttaccctcgtttaacagtgattaatcttcat |
42563765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University