View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15745_high_89 (Length: 249)

Name: NF15745_high_89
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15745_high_89
NF15745_high_89
[»] chr6 (13 HSPs)
chr6 (16-239)||(33361206-33361429)
chr6 (16-233)||(33265596-33265813)
chr6 (16-233)||(33274740-33274957)
chr6 (15-243)||(33060259-33060487)
chr6 (19-243)||(33307190-33307414)
chr6 (16-243)||(33641766-33641993)
chr6 (16-233)||(33390787-33391004)
chr6 (19-232)||(33403326-33403539)
chr6 (16-227)||(33412638-33412849)
chr6 (16-243)||(31566270-31566500)
chr6 (48-243)||(33288279-33288474)
chr6 (96-227)||(12782220-12782351)
chr6 (31-84)||(9169554-9169607)
[»] chr2 (1 HSPs)
chr2 (15-233)||(17437837-17438055)
[»] scaffold1749 (1 HSPs)
scaffold1749 (54-233)||(860-1039)
[»] scaffold0428 (1 HSPs)
scaffold0428 (54-233)||(9621-9800)
[»] chr4 (7 HSPs)
chr4 (53-227)||(31030472-31030646)
chr4 (49-232)||(31496138-31496321)
chr4 (53-227)||(31020591-31020765)
chr4 (42-227)||(31488776-31488961)
chr4 (53-214)||(31501312-31501473)
chr4 (54-232)||(31476203-31476381)
chr4 (55-108)||(31244241-31244294)
[»] chr8 (1 HSPs)
chr8 (55-128)||(6473313-6473386)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 33361429 - 33361206
Alignment:
Q  16 tcatcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttcttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  33361429 tcatcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcatctttagaggtgaagacactcgcaacaatttcactgattttcttt 33361330  T
Q  116 ttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaagg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33361329 ttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaagg 33361230  T
Q  216 atctcaggtttttgttgcattctt 239  Q
    ||||||||||||||||||||||||    
T  33361229 atctcaggtttttgttgcattctt 33361206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 33265813 - 33265596
Alignment:
Q  16 tcatcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttcttt 115  Q
    |||||||||| ||||| |||||| ||||  | |||| |||||||||| ||||||||||| |||| |||||| ||||| ||||||||||| ||||||||||    
T  33265813 tcatcttcagttcttgggacttcatcaagaagaaattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttcttt 33265714  T
Q  116 ttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaagg 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  33265713 ttgatgcccttcaaacaaaaggcattattgtattttcggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaatcgaagg 33265614  T
Q  216 atctcaggtttttgttgc 233  Q
    |||||| |||||||||||    
T  33265613 atctcaagtttttgttgc 33265596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 33274957 - 33274740
Alignment:
Q  16 tcatcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttcttt 115  Q
    |||||||||| ||||| |||||| ||||  | |||| |||||||||| ||||||||||| |||| |||||| ||||| ||||||||||| ||||||||||    
T  33274957 tcatcttcagttcttgggacttcatcaagaagaaattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttcttt 33274858  T
Q  116 ttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaagg 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  33274857 ttgatgcccttcaaacaaaaggcattattgtattttcggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaatcgaagg 33274758  T
Q  216 atctcaggtttttgttgc 233  Q
    |||||| |||||||||||    
T  33274757 atctcaagtttttgttgc 33274740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 33060487 - 33060259
Alignment:
Q  15 atcatcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  33060487 atcatcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctt 33060388  T
Q  115 tttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaag 214  Q
    |||||||||||| |||||||||||||||| ||||||  ||||| || |||||||| ||||||||||| ||| ||||| |||||  |||| |||||||||     
T  33060387 tttgatgcccttgaaacaaaaggcattatggtatttcgggatgtcattaatcttcaaaaaggtgaatgcataggacctgagctttttcgtgcaatcgaaa 33060288  T
Q  215 gatctcaggtttttgttgcattcttctca 243  Q
     |||||||||||  |||||  ||||||||    
T  33060287 tatctcaggtttacgttgcgatcttctca 33060259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 33307414 - 33307190
Alignment:
Q  19 tcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttg 118  Q
    |||| ||||||||||||||||||||  || ||  |||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||    
T  33307414 tctttagctcttgtgacttcttcaagaaacaactattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaactttactgattttctttttg 33307315  T
Q  119 atgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatc 218  Q
    |||||||| |||||||||||||| ||| ||||  ||||||||||||||||| ||| |||||||| || | ||| |||||| |||||||||||||||||||    
T  33307314 atgcccttgaaacaaaaggcatttttgcatttcgggatgacactaatcttcaaaagggtgaatctatagaacctgagctccttcgagcaatcgaaggatc 33307215  T
Q  219 tcaggtttttgttgcattcttctca 243  Q
    || ||||||||||||| ||||||||    
T  33307214 tcgggtttttgttgcagtcttctca 33307190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 33641766 - 33641993
Alignment:
Q  16 tcatcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttcttt 115  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||  |||| ||||||||||||||||||||| |||||||||||||    
T  33641766 tcatctttagctcttgtaacttcttcaaagaaaaattattatgatgtgtttgtcacctacagaggtgaagacactcgcaacaatttgactgattttcttt 33641865  T
Q  116 ttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaagg 215  Q
    ||||||||||| || ||||||||||||| ||||||  |||||||| |||||||| |||||||||||  || ||| | |||||  |||||||||||||| |    
T  33641866 ttgatgcccttgaatcaaaaggcattatggtatttcgggatgacattaatcttcaaaaaggtgaatatataggatctgagcttcttcgagcaatcgaaag 33641965  T
Q  216 atctcaggtttttgttgcattcttctca 243  Q
    |||||| ||||  || ||| ||||||||    
T  33641966 atctcatgtttacgtagcagtcttctca 33641993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 33391004 - 33390787
Alignment:
Q  16 tcatcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttcttt 115  Q
    ||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||  ||| ||||||||||||||||||||||| |||||||||||    
T  33391004 tcatcttcagctcttgtgacttcttcaaaaagatattattatgatgtgtttgtcaccttccgaggtgaagacactcgcaacaatttcattgattttcttt 33390905  T
Q  116 ttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaagg 215  Q
    ||||||||||  |||||||||||||| ||||||||  |||| |||  ||||||| ||||||||||||||| ||||| || ||  ||| | ||||||||||    
T  33390904 ttgatgccctggaaacaaaaggcattcttgtatttcgggataacagaaatcttcaaaaaggtgaatccataggacctgaacttcttcaatcaatcgaagg 33390805  T
Q  216 atctcaggtttttgttgc 233  Q
    ||||||||||| ||||||    
T  33390804 atctcaggtttatgttgc 33390787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 33403539 - 33403326
Alignment:
Q  19 tcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttg 118  Q
    |||||||||||||||||||||||||  | |||| |||| ||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  33403539 tcttcagctcttgtgacttcttcaagaagaaattattacgatgtgtttatcacctttagaggtgaagacactcggaacaatttcactgattttctttttg 33403440  T
Q  119 atgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatc 218  Q
    |||||||| |||||||||||||| ||| ||||   |||||||||||||||| | | ||||||||| | | |||||||||  ||||||||||| ||||||     
T  33403439 atgcccttgaaacaaaaggcatttttgcatttcgagatgacactaatcttcaacagggtgaatccttagaacccgagcttcttcgagcaatcaaaggatt 33403340  T
Q  219 tcaggtttttgttg 232  Q
    ||||||||| ||||    
T  33403339 tcaggttttcgttg 33403326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 33412849 - 33412638
Alignment:
Q  16 tcatcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttcttt 115  Q
    ||||||| ||||||||||||||||||||  | |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  33412849 tcatctttagctcttgtgacttcttcaagaagaaattattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaatttcactgattatcttt 33412750  T
Q  116 ttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaagg 215  Q
    ||||||| ||| |||| ||||| |||  || ||||  ||||||||| ||||||  ||||||||||  ||| ||||| |||||| |||| |||||||||||    
T  33412749 ttgatgcacttgaaaccaaaggtatttatgcatttagggatgacacaaatcttaaaaaaggtgaagtcataggacctgagctccttcgtgcaatcgaagg 33412650  T
Q  216 atctcaggtttt 227  Q
    ||||||||||||    
T  33412649 atctcaggtttt 33412638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 31566270 - 31566500
Alignment:
Q  16 tcatcttcagctcttgtgacttcttcaa--agaaaa-atcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttc 112  Q
    |||||| |||||||||| ||||||||||  |||||  || |||||||||| |||||||| || |||| ||||||||||||||||||||||| ||||||||    
T  31566270 tcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaagacactcgcaacaatttcattgattttc 31566369  T
Q  113 tttttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcga 212  Q
    ||||||||||| || |||||||||| ||| ||||||||  |||||| || ||||||| ||||||||||||||| || || |||||  ||||||||||| |    
T  31566370 tttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatccatagggcctgagcttcttcgagcaatcca 31566469  T
Q  213 aggatctcaggtttttgttgcattcttctca 243  Q
    ||||||||| |||||||||||  ||||||||    
T  31566470 aggatctcatgtttttgttgccgtcttctca 31566500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 243
Target Start/End: Complemental strand, 33288474 - 33288279
Alignment:
Q  48 aaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcattattgta 147  Q
    ||||||||| || |||||| ||||||||||||  || |||||||||||||||||||||| || ||| || ||||| ||| ||||||| || |||  || |    
T  33288474 aaatcattacgacgtgtttatcacctttagaggcgatgacactcgcaacaatttcactggttatctattagatgctcttaaaacaaacggtatttatgca 33288375  T
Q  148 tttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatctcaggtttttgttgcattcttctca 243  Q
    |||  ||||||||| ||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||| |||||| | ||||||    
T  33288374 tttagggatgacaccaatcttcaaaaaggtgaatccataggacctgagctccttcgagcaatcgaaggatcccaggttttcgttgcagtattctca 33288279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 12782351 - 12782220
Alignment:
Q  96 caatttcactgattttctttttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgag 195  Q
    |||||||||||||  |||||||| ||||||||||| |||| | ||| ||  |||    |||||||||||||||| ||||||| | ||||| | | ||||     
T  12782351 caatttcactgatcatctttttggtgcccttcaaagaaaaagaatttttacattcagagatgacactaatcttcaaaaaggtaattccatagcatccgac 12782252  T
Q  196 ctcattcgagcaatcgaaggatctcaggtttt 227  Q
    ||||||| |||||| ||||| |||||||||||    
T  12782251 ctcattcaagcaattgaaggctctcaggtttt 12782220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 9169607 - 9169554
Alignment:
Q  31 gtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagagatgaa 84  Q
    ||||| ||| ||| || ||||||||||||||||||| |||||||||||| ||||    
T  9169607 gtgacatctccaaggagaaatcattatgatgtgtttttcacctttagaggtgaa 9169554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 17437837 - 17438055
Alignment:
Q  15 atcatcttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctt 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  17437837 atcaacttcagctcttgtgacttcttcaaagaaaaatcattatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctt 17437936  T
Q  115 tttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaag 214  Q
    ||||| |||||| ||| ||||| |||| ||| ||||   |||||||||||||||| ||||||||||||||| ||| | |||||  |||||||||| ||||    
T  17437937 tttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccataggatctgagcttcttcgagcaatagaag 17438036  T
Q  215 gatctcaggtttttgttgc 233  Q
    |||||||||||||||||||    
T  17438037 gatctcaggtttttgttgc 17438055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 233
Target Start/End: Complemental strand, 1039 - 860
Alignment:
Q  54 ttatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcattattgtatttttg 153  Q
    |||||| |||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||| ||||||| ||| |||||| |||  ||  ||   |    
T  1039 ttatgacgtgtttgtcaccttcagaggtgaagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggtatttatgctttcagg 940  T
Q  154 gatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatctcaggtttttgttgc 233  Q
    |||||||| ||||||||||| ||||||||||| ||||| |||||| ||||| |||||||||||||||||||||| |||||    
T  939 gatgacacaaatcttccaaagggtgaatccataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttgc 860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 233
Target Start/End: Complemental strand, 9800 - 9621
Alignment:
Q  54 ttatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcattattgtatttttg 153  Q
    |||||| |||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||| ||||||| ||| |||||| |||  ||  ||   |    
T  9800 ttatgacgtgtttgtcaccttcagaggtgaagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggtatttatgctttcagg 9701  T
Q  154 gatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatctcaggtttttgttgc 233  Q
    |||||||| ||||||||||| ||||||||||| ||||| |||||| ||||| |||||||||||||||||||||| |||||    
T  9700 gatgacacaaatcttccaaagggtgaatccataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttgc 9621  T

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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 31030646 - 31030472
Alignment:
Q  53 attatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcattattgtattttt 152  Q
    |||||||||||||||||||||||||||  ||||| ||||||  ||| |||| ||||  |||||||| ||||||||||| |||||||||| ||| ||||      
T  31030646 attatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag 31030547  T
Q  153 ggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatctcaggtttt 227  Q
     || ||||||||||||| |||||||||||||||   ||||||||||||||| ||||| ||||| |||||||||||    
T  31030546 agacgacactaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaattgaagggtctcaggtttt 31030472  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 31496138 - 31496321
Alignment:
Q  49 aatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcattattgtat 148  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||  |||||||||| || | || | | ||||||||  || ||    
T  31496138 aatcattatgacgtgtttgtcacctttagaggtgaggacactcgcaacaatttcactgatcatctttttgataccttccacagagaaggcatttctgcat 31496237  T
Q  149 ttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatctcaggtttttgttg 232  Q
    ||   |||||||||||||||||||||||||||||||| |||||  ||||| || | ||||| |||   ||||||||||||||||    
T  31496238 ttagagatgacactaatcttccaaaaggtgaatccataggacctaagctcctttgtgcaattgaaaactctcaggtttttgttg 31496321  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 31020765 - 31020591
Alignment:
Q  53 attatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcattattgtattttt 152  Q
    |||||||||||||||||||||||||||  ||||| ||||||  ||| |||| ||||  |||||||| ||||||||||| |||||||||| ||| ||||      
T  31020765 attatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag 31020666  T
Q  153 ggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatctcaggtttt 227  Q
     || ||| ||||||||| |||||||||||||||   ||||||||||||||| ||||| ||||| |||||||||||    
T  31020665 agacgacgctaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaattgaagggtctcaggtttt 31020591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 31488776 - 31488961
Alignment:
Q  42 aaagaaaaatcattatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcatt 141  Q
    |||||| ||| ||||||| |||||||||||||| |||| |||||| ||||||  ||| || ||||||  |||||||| ||||||||||| ||||||||||    
T  31488776 aaagaataattattatgacgtgtttgtcaccttcagaggtgaagatactcgcttcaactttactgatcatctttttgctgcccttcaaagaaaaggcatt 31488875  T
Q  142 attgtatttttggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatctcaggtttt 227  Q
     |||  |||   ||||||||||| |||| |||||||||||| || | ||||||||||||||| ||||| ||||| |||||||||||    
T  31488876 tttgcgtttagagatgacactaagcttcaaaaaggtgaatcgatagcacccgagctcattcgtgcaattgaagggtctcaggtttt 31488961  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 214
Target Start/End: Original strand, 31501312 - 31501473
Alignment:
Q  53 attatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttgatgcccttcaa-acaaaaggcattattgtatttt 151  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||  ||||||||||| ||||||| | | |||||||| ||| ||||     
T  31501312 attatgatgcgtttgtcacttttagaggtgaagacactcgcaacaatttcacttatcatctttttgatg-ccttcaacagagaaggcattcttgcattta 31501410  T
Q  152 tggatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaag 214  Q
     ||||||||||||||||||||||||||||||||| | | |||||||  |||| ||||| ||||    
T  31501411 gggatgacactaatcttccaaaaggtgaatccatagcatccgagcttcttcgtgcaattgaag 31501473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 31476203 - 31476381
Alignment:
Q  54 ttatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcattattgtatttttg 153  Q
    |||||| |||||||| | ||| |||| |||||| ||||||||||||||||||||||| ||||||||||||||  ||  ||||||  || ||| ||||  |    
T  31476203 ttatgacgtgtttgtgagcttcagaggtgaagatactcgcaacaatttcactgatttcctttttgatgccctcgaagaaaaaggtgtttttgcatttagg 31476302  T
Q  154 gatgacactaatcttccaaaaggtgaatccatcggacccgagctcattcgagcaatcgaaggatctcaggtttttgttg 232  Q
    |||||||||||||||| ||||||||||||||| | ||| || ||| |||  ||||| ||||| ||||||||||| ||||    
T  31476303 gatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttg 31476381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 31244241 - 31244294
Alignment:
Q  55 tatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgat 108  Q
    |||||||||||||| | |||||||| ||  ||||| ||||||||||||||||||    
T  31244241 tatgatgtgtttgtgagctttagaggtggcgacacacgcaacaatttcactgat 31244294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 6473386 - 6473313
Alignment:
Q  55 tatgatgtgtttgtcacctttagagatgaagacactcgcaacaatttcactgattttctttttgatgcccttca 128  Q
    |||||||||||||| | |||| |||  |||||||| ||||||||||||||||||  |||||||| ||| |||||    
T  6473386 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 6473313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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