View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_90 (Length: 248)
Name: NF15745_high_90
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_90 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 47460624 - 47460837
Alignment:
| Q |
19 |
tcttgtcctggtttgaactgcaaaggtgtgttggagcttgagtcatgcaggaaattgcttcctaaagaattgattgataagtggaatgatgcattatgtg |
118 |
Q |
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| T |
47460624 |
tcttgtcctggtttgaactgcaaaggtgtgttggagcttgagtcatgcaggaaattgcttcctaaagaattgattgataagtggaatgatgcattatgtg |
47460723 |
T |
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| Q |
119 |
aggcnnnnnnncttactgttcctaagttctattgcccctttaaggattgttctgctatgttgcttgatgaggatgaaggaagagaagatgttagggaatc |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460724 |
aggctttttttcttactgttcctaagttctattgcccctttaaggattgttctgctatgttgcttgatgaggatgaaggaagagaagatgttagggaatc |
47460823 |
T |
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| Q |
219 |
tgagtgcccttctt |
232 |
Q |
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||||||| |||||| |
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| T |
47460824 |
tgagtgcgcttctt |
47460837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 47467290 - 47467495
Alignment:
| Q |
19 |
tcttgtcctggtttgaactgcaaaggtgtgttggagcttgagtcatgcaggaaattgcttcctaaagaattgattgataagtggaatgatgcattatgtg |
118 |
Q |
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||||||||||||||||||||||| |||||||| |||||||| || |||||| ||||||||| ||||| |||||||||| ||||||||||||||| |||| |
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| T |
47467290 |
tcttgtcctggtttgaactgcaagggtgtgttagagcttgaatcttgcaggtcattgcttccaaaagagttgattgataggtggaatgatgcattgtgtg |
47467389 |
T |
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| Q |
119 |
aggcnnnnnnncttactgttcctaagttctattgcccctttaaggattgttctgctatgttgcttgatgaggatgaaggaagagaagatgttagggaatc |
218 |
Q |
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| T |
47467390 |
aggctttttttcttgctgttcctaagttctattgtccctttaaggattgctctgctatgatgctggatgaaaatgaagatggacaagatattagggaatc |
47467489 |
T |
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| Q |
219 |
tgagtg |
224 |
Q |
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|||||| |
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| T |
47467490 |
tgagtg |
47467495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 229
Target Start/End: Original strand, 47455576 - 47455733
Alignment:
| Q |
72 |
attgcttcctaaagaattgattgataagtggaatgatgcattatgtgaggcnnnnnnncttactgttcctaagttctattgcccctttaaggattgttct |
171 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||| ||||| || || ||||||||||||||| |
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| T |
47455576 |
attgcttcctaaagaattgtttgataagtggaatgatgcattgtgtgaagctctttttgttactgttcctaaattctactgtccatttaaggattgttct |
47455675 |
T |
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| Q |
172 |
gctatgttgcttgatgaggatgaaggaagagaagatgttagggaatctgagtgccctt |
229 |
Q |
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||||||||| | |||||| ||||||| |||||| ||||||||||||| ||||||| |
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| T |
47455676 |
gctatgttgttggatgagaatgaaggggtggaagatattagggaatctgaatgccctt |
47455733 |
T |
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