View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_98 (Length: 239)
Name: NF15745_high_98
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_98 |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 8507750 - 8507856
Alignment:
| Q |
1 |
acccatgcctcttcaacttgtgcacaaagtgtttttgggtaaacaaaaatagttatgtatattattgaatatacgaatcccaaaagataattgagattca |
100 |
Q |
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| T |
8507750 |
acccatgcctcttcaacttgtgcacaaagtgtttttgggtaaacaaaaatagctatgtatactaatgagtatacgaatcccaaaagataattgagattca |
8507849 |
T |
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| Q |
101 |
tttgtac |
107 |
Q |
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| T |
8507850 |
tttgtac |
8507856 |
T |
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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 8507985 - 8508049
Alignment:
| Q |
158 |
gcggctaaattcatat--gttaagaagtggagattacaggttgactctgcatcccaacatatcaa |
220 |
Q |
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| T |
8507985 |
gcggctaaattcatatatgttgagaagtggagattacaggttgactccgcattccaacatatcaa |
8508049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 8507878 - 8507913
Alignment:
| Q |
122 |
aaacatatgtacatacctaataataccatattattt |
157 |
Q |
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| T |
8507878 |
aaacatatgtacatacctaataataccatattattt |
8507913 |
T |
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