View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_high_99 (Length: 238)
Name: NF15745_high_99
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_high_99 |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 29210261 - 29210412
Alignment:
| Q |
60 |
atgcacgtacatagtatcaaataactcaatgtaaatttnnnnnnnnntaataataatacaccatctaagtatttgtaannnnnnnnaaagatcatctgac |
159 |
Q |
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| T |
29210261 |
atgcacgtacatagtatcaaataactcaatgtaaaattatttttt--taaaaa--atacaccatctaagtatttgtaattttttttaaagatcatctgac |
29210356 |
T |
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| Q |
160 |
ataagaaagtcacactatattgtgatttgattgaatgttatggtgcataaaaatta |
215 |
Q |
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| T |
29210357 |
ataagaaagtcacactatattgtgatttgattgaatgttatggtgcataaaaatta |
29210412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 29210581 - 29210612
Alignment:
| Q |
207 |
taaaaattaatccatatttttcttctattttt |
238 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29210581 |
taaaaattaatccatatttttcttctattttt |
29210612 |
T |
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