View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15745_low_1 (Length: 1054)
Name: NF15745_low_1
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 963; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 963; E-Value: 0
Query Start/End: Original strand, 1 - 1036
Target Start/End: Complemental strand, 3880404 - 3879364
Alignment:
| Q |
1 |
ggaatgaaaagaaacctaatctctcacagatacaacagccagaaaagttgagacattatcccaaggatcatctaccgctaaacactgatagtaacaacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3880404 |
ggaatgaaaagaaacctaatctctcacagatacaacagccagaaaagttgagacattatcccaaggatcatctaccgctaaacactgatagtaacaacta |
3880305 |
T |
|
| Q |
101 |
ataatgattcatgcaattatttcaactaaagtcacaaatttcagtaattctttaaactgattttgtgagaataccaagaataccctttcataaacttcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3880304 |
ataatgattcatgcaattatttcaactaaagtcacaaatttcagtagttctttaaactgattttgtgagaataccaagaataccctttcataaacttcat |
3880205 |
T |
|
| Q |
201 |
caatatgacatacaaaa---gtacatcagtattataaaaatcacacgcaaaacttcaatcaataagttatggtacagctggattagttgattatataaaa |
297 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3880204 |
caatatgacatacaaaaaaagtacatcagtattataaaaatcacaagcaaaacttcaatcaataagttatggtacagctggattagttgattatataaaa |
3880105 |
T |
|
| Q |
298 |
aacaattagaattgtgtaaaagggatcaagagtaggaaaacacttatttgaattgtcagaatatactactatactaacatagctcatgaataatcaaatt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3880104 |
aacaattagaattgtgtaaaagggatcaagagtaggaaaacacttatttgaattgtcagaatatactactatactaacatagctcatgaataatcaaatt |
3880005 |
T |
|
| Q |
398 |
ttggaaaataaatccagaaattcaaaagaaatatttgttcatgtacctcacaataatccagaactagtgatttcaacataggacatcctccaccatcacc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3880004 |
ttggaaaataaatccagaaattcaaaagaaatatttgttcatgtacctcacaataatccagaactagtgatttcaacataggacatcctccaccatcacc |
3879905 |
T |
|
| Q |
498 |
aaaaacaccacatatagaatttgtcaaagattcacactca--gagatccacttattggaaagattggcattgcaatgctaatgaagttaagctatcctgt |
595 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879904 |
aaaaacatcacatatagaatttgtcaaagattcacactcagagagatccacttcttggaaagattggcattgcaatgctaatgaagttaagctatcctgc |
3879805 |
T |
|
| Q |
596 |
ttttgcagtgctaatttctgcatatactctagaatatatgagaatggggaatgaaacaagacataagtataagtgtataacacatacttgaagtgaattt |
695 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879804 |
ttttgcagtgctaatgtctgcatatactctagaatatatgagaatggggaatgaaacaagacataagtataagtgtataacacatacttgaagtgaattt |
3879705 |
T |
|
| Q |
696 |
gaagtgatattgatccggtgaagtacagagcagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatctgctaatctgcaaaggaaac |
795 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879704 |
gaagtgatattgatccggtgaagtacagagcagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatctgctaatctgcaaaggaaac |
3879605 |
T |
|
| Q |
796 |
cattcnnnnnnntaaattaggcgcaacaatagaaaaaaggatttggtattgacttaaacagaaagtgaaaagcaatagagagagacggatcaataataga |
895 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879604 |
cattcaaaaaaataaattaggcgcaacaatagaaaaaaggatttggtattgacttaaacagaaagtgaaaagcaatagagagagacggatcaataataga |
3879505 |
T |
|
| Q |
896 |
attatagtgcttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgct |
995 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3879504 |
attatagtgcttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaatgtggaagatccaacgacgct |
3879405 |
T |
|
| Q |
996 |
taagtcaatagactgcaactgcggagttacaaaacctgcat |
1036 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879404 |
caagtcaatagactgcaactgcggagttacaaaacctgcat |
3879364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 435 - 619
Target Start/End: Complemental strand, 3865991 - 3865805
Alignment:
| Q |
435 |
ttcatgtacctcacaataatccagaactagtgatttcaacataggacatcctccaccatcaccaaaaacaccacatatagaatttgtcaaagattcacac |
534 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||| ||||||| |||||| || |||||||| ||||||||| |
|
|
| T |
3865991 |
ttcatgtacctcacaattatcaagaactagtgatttcaacatgggacatcctccaccgtcactaaaaacatcacatacagtgtttgtcaatgattcacac |
3865892 |
T |
|
| Q |
535 |
tcagaga--tccacttattggaaagattggcattgcaatgctaatgaagttaagctatcctgtttttgcagtgctaatttctgcata |
619 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3865891 |
tcagagaggtccacttcttgtaaagattggcattgcagcgctaatgtagttaagctatcctgcttttgcagtgctaatttctgcata |
3865805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 677 - 800
Target Start/End: Complemental strand, 3865732 - 3865609
Alignment:
| Q |
677 |
acatacttgaagtgaatttgaagtgatattgatccggtgaagtacagagcagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatct |
776 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
3865732 |
acatacttgaagtgaatttgaagtgatattgatccggtggagtacagagcagttagacacttgtatagaagaaagcgatatagctctcaaattcaaatct |
3865633 |
T |
|
| Q |
777 |
gctaatctgcaaaggaaaccattc |
800 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
3865632 |
gctaatctgccaaggaaaccattc |
3865609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 905 - 1013
Target Start/End: Complemental strand, 3865513 - 3865405
Alignment:
| Q |
905 |
cttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaat |
1004 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||| |
|
|
| T |
3865513 |
cttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacaccaatctaatattctgcaaacgtggaagatccaacgacaccgaagtcaat |
3865414 |
T |
|
| Q |
1005 |
agactgcaa |
1013 |
Q |
| |
|
||||||||| |
|
|
| T |
3865413 |
agactgcaa |
3865405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University