View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_117 (Length: 235)
Name: NF15745_low_117
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_117 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 48749202 - 48749001
Alignment:
| Q |
18 |
gaacaagctaaaattaacagtgcaaaagctatgagacctaacatggctgctaagcctccaaaaaggtaaggaattggtgagtgccatgatgagtgattca |
117 |
Q |
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| T |
48749202 |
gaacaagctaaaattaacagtgcaaaagctatgagacctaacatggctgctaagcctccaaaaaggtaaggaattggtgagtgccatgatgagtgattca |
48749103 |
T |
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| Q |
118 |
tcattgaagctgtggacgaaggtgctaatgatgagtaactagttgaagatgttgtgatgcttctcatgtttgttgattttgatttgaaaaatgtttctgg |
217 |
Q |
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| T |
48749102 |
tcattgaagctgtggatgaaggtgctaatgatgagtaactagttgaagatgttgtgatgcttctcatgtttgttgattttgatttgaaaaatgtttctgg |
48749003 |
T |
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| Q |
218 |
tg |
219 |
Q |
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|| |
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| T |
48749002 |
tg |
48749001 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 53701370 - 53701452
Alignment:
| Q |
30 |
attaacagtgcaaaagctatgagacctaacatggctgctaagcctccaaaaaggtaaggaattggtgagtgccatgatgagtg |
112 |
Q |
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| T |
53701370 |
attaatagagcaaaagctattaaacctaacatggctgctaaaccaccgaacaagtatggaactggtgaatgccatggtgagtg |
53701452 |
T |
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