View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15745_low_12 (Length: 550)
Name: NF15745_low_12
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 32983189 - 32982918
Alignment:
| Q |
16 |
atgaatgaaaagataaaaggacaagagtggcataaaacggataaggatagagaaagttaccaaaagtactatataaaggacacttttatccactaacaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32983189 |
atgaatgaaaagataaaaggacaagagtggcataaaacggataaggatagagaaagttaccaaaagtactatataaaggacacttttatccactaacaaa |
32983090 |
T |
|
| Q |
116 |
gggagtcttcagctaaattttaacttggttttgagaaccctagctgccacctttcatcactttctcattttccatttcaaatcattacattcaagaccat |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32983089 |
gggagtcttcagctaaattataacttggttttgagaaccctagctgccacctttcatcactttctcattttccatttcaaatcattacattcaagaccat |
32982990 |
T |
|
| Q |
216 |
tgaagctccatgtttaaagagcaagcattagatctgttgcatcagcctgtgacaactctgcaactttgtata |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32982989 |
tgaagctccatgtttaaagagcaagcattagatctgttgcatcagcctgtgacaactctgcaactttgtata |
32982918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 296 - 530
Target Start/End: Complemental strand, 32982862 - 32982627
Alignment:
| Q |
296 |
gtaatatatatggattgaagttatcattttcttatctttccatgttttcatgtaagatcactatgagctaaatatttctttggtttagaaataacataat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32982862 |
gtaatatatatggattgaagttatcattttcttatctttccatgttttcatgtaagatcactatgagctaaatatttctttggtttagaaataacataat |
32982763 |
T |
|
| Q |
396 |
gttttgattgacc-nnnnnnnnnncataatgttttgttttacgttcttattatcttggtttttcattatatggttgtgagaataaattttattgaagttg |
494 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32982762 |
gttttgattgaccaaaaaaaaaaacataatgttttattttacgttcttattatcttggtttttcattatatggttgtgagaataaattttattgaagttg |
32982663 |
T |
|
| Q |
495 |
tgttacattatgaatgttgtccacataagtaaagcg |
530 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32982662 |
tgtgacattatgaatgttgtccacataagtaaagcg |
32982627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University