View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_121 (Length: 227)
Name: NF15745_low_121
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_121 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 7159312 - 7159100
Alignment:
| Q |
1 |
ctagcattttttccatccaaggtaaagctgcccactatgacctgtaaatgattcataaaatgttaaaattctaaaataattataaaagtaatgcaacaat |
100 |
Q |
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| T |
7159312 |
ctagcattttttccatccaaagtaaagctgcccactatgacctgtaaatgattcataaaatgttaaaattcttaaaaatttataaaagtaatgcaacaat |
7159213 |
T |
|
| Q |
101 |
gtttcattaatccttcttgtaaaaagtactatcaacacacaagaacttactttcaaattgcgcatttaaaaatcaacatgaattatctatcatttgtgag |
200 |
Q |
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| T |
7159212 |
gtttcattaatccttcttgtaaaaagtactatcaacacacaagaacttactttcaaattgcacatttaaaaatcaacatgaattatctatcatttgtgag |
7159113 |
T |
|
| Q |
201 |
gaatacctttacc |
213 |
Q |
| |
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|||||||||||| |
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| T |
7159112 |
caatacctttacc |
7159100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 4867451 - 4867245
Alignment:
| Q |
7 |
ttttttccatccaaggtaaagctgcccactatgacctgtaaatgattcataaaatgttaaaattctaaaataattataaaagtaatgcaacaatgtttca |
106 |
Q |
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||||| |||||||| ||||| || |||||||||||||| ||||||||| |||||| |||||||||| ||| | |||||||| |||||||| ||||||| | |
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| T |
4867451 |
tttttgccatccaatgtaaaactacccactatgacctggaaatgattcttaaaattttaaaattcttaaaaagttataaaattaatgcaataatgtttga |
4867352 |
T |
|
| Q |
107 |
ttaatccttcttgtaaaaagtactatcaacacacaagaacttactttcaaattgcgcattt-aaaaatcaacatgaattatctatcatttgtgaggaata |
205 |
Q |
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|||||||||||| ||||| ||| |||||||||||||||||||| |||| ||||| ||||| ||||||| |||| |||||||||||||||| || |||| |
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| T |
4867351 |
ctaatccttcttgcaaaaaatacaatcaacacacaagaacttacattcacattgcacatttaaaaaatctacataaattatctatcatttgagaacaata |
4867252 |
T |
|
| Q |
206 |
cctttac |
212 |
Q |
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||||||| |
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| T |
4867251 |
cctttac |
4867245 |
T |
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