View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15745_low_124 (Length: 223)
Name: NF15745_low_124
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_124 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 33514935 - 33514737
Alignment:
| Q |
16 |
agtttctaatattggttaagcatatatacaacaatatcaacaaacttatcaagtatgagtatttttagtttcttgatgttgtttaacttttgggatccaa |
115 |
Q |
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| T |
33514935 |
agtttctaatattggttaagcatatatacaacaatatcaacaaacttatcaagtatgagtatttttagtttcttgatgttgtttaacttttgggatccaa |
33514836 |
T |
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| Q |
116 |
catatatttaggccaaaaaccagcattgaaaagagattcttctattgcacaaaaagaaagagattccttcatacaataattgattaaaaatagtataat |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33514835 |
catatatttaggccaaaaactagcattgaaaagagattcttctatttcacaaaaataaagagattccttcatacaataattgattaaaaatagtataat |
33514737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 33517360 - 33517231
Alignment:
| Q |
16 |
agtttctaatattggttaagcatatatacaacaatatcaacaaac-ttatcaag--tatgagtatttttagtttcttgatgtt-gtttaacttttgggat |
111 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||||| |||||||||||||| ||| || | |||||||||| |
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| T |
33517360 |
agtttctaatattggttaagcatatatacaataatatcaacacactttatcaagtatatgagta-ttttagtttcttgaagttacttgatcttttgggat |
33517262 |
T |
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| Q |
112 |
ccaacatatatttaggccaaaaaccagcatt |
142 |
Q |
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||||||||||| ||||||||||||||||||| |
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| T |
33517261 |
ccaacatatatgtaggccaaaaaccagcatt |
33517231 |
T |
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