View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15745_low_126 (Length: 222)
Name: NF15745_low_126
Description: NF15745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15745_low_126 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 2672567 - 2672376
Alignment:
| Q |
16 |
cacagacgttttcagcagattgcaattgactaatgaaaagttaagtaagttaccaggtagctaaagttaattagattggattattcaaatgtgattgtga |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2672567 |
cacaaacgttttcagcagattgcaattgactgatgaaaagttaagtaagttaccaggtagctaaagttaattagattggattattcaaatgtgattgtga |
2672468 |
T |
|
| Q |
116 |
aaggagtgatcgtagatgttactaaaatgtttgccaatactaatcaattaaaattgaacaatttatacatagaaatagtaagtaaggattgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2672467 |
aaggagtgatcgtagatgttactaaaatgtttgccaatactaatcaattaaaattgaacaatttatacatagaaatagtaagtaaggattgt |
2672376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 2690455 - 2690353
Alignment:
| Q |
24 |
ttttcagcagattgcaattgactaatgaaaagttaagtaagttaccaggtagctaaagttaatta----gattggattattcaaatgtgattgtgaaagg |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||| || ||||||||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
2690455 |
ttttcagcagattgcaatagactaatgaaaagtt----aagttaccagatacctaaagttaattaattggattgaattattcaaatgtgattggaaaagg |
2690360 |
T |
|
| Q |
120 |
agtgatc |
126 |
Q |
| |
|
||||||| |
|
|
| T |
2690359 |
agtgatc |
2690353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University